Genetic Analysis: An Integrated Approach (3rd Edition)
3rd Edition
ISBN: 9780134605173
Author: Mark F. Sanders, John L. Bowman
Publisher: PEARSON
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Textbook Question
Chapter 8, Problem 13P
For a eukaryotic gene whose transcription require the activity of an enhancer sequence, explain how proteins bound at the enhancer interact with RNA pol II and transcription factors bound at the promoter.
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The transcription of a gene called YFG (your favoritegene) is activated when three transcription factors (TFA,TFB, TFC) interact to recruit the co-activator CRX. TFA,TFB, TFC, and CRX and their respective binding sitesconstitute an enhanceosome located 10 kb from the transcription start site. Draw a diagram showing how youthink the enhanceosome functions to recruit RNA polymerase to the promoter of YFG.
ennar
region of gene X, which determines the length of the tail in mice, is mutated so
that transcription factors bind it at a much higher affinity compared to the wild-type sequence.
What is the most likely phenotypic outcome?
Tail length will not change because the enhancer is a non-coding sequence
Tail length will increased due to increased activity of the gene's promoter
Tail length will decreased because any mutation will cause a loss-of-function of these regulatory regions
Not just the tail will be enlarged because increased activity of the enhancer will impact many genes
Discuss the function of enhancer sequences ineukaryotic transcription
Chapter 8 Solutions
Genetic Analysis: An Integrated Approach (3rd Edition)
Ch. 8 - Prob. 1PCh. 8 - 8.2 In one to two sentences each, describe the...Ch. 8 - 8.3 Answer these questions concerning...Ch. 8 - 8.4 The diagram below shows a DNA duplex. The...Ch. 8 - The following is a portion of an mRNA sequence:...Ch. 8 - Compare and contrast the properties of DNA...Ch. 8 - The DNA sequences shown below are from the...Ch. 8 - Bacterial and eukaryotic gene transcripts can...Ch. 8 - Describe the two types of transcription...Ch. 8 - What is the role of enhancer sequences in...
Ch. 8 - Prob. 11PCh. 8 - Draw a bacterial promoter and label its consensus...Ch. 8 - For a eukaryotic gene whose transcription require...Ch. 8 - Three genes identified in the diagram as A, B and...Ch. 8 - Prob. 15PCh. 8 - 8.16 The segment of the bacterial gene involved in...Ch. 8 - Prob. 17PCh. 8 - Prob. 18PCh. 8 - 8.19 A DNA fragment from the end of the mouse...Ch. 8 - 8.20 Wild-type E. coli grow best at but can grow...Ch. 8 - A mutant strain of Salmonella bacteria carries a...Ch. 8 - 8.22 The human wild-type allele and a certain...Ch. 8 - Prob. 23PCh. 8 - A full-length eukaryotic gene is inserted into a...Ch. 8 - The accompanying illustration shows a portion of a...Ch. 8 - DNA footprint protection (described in Research...Ch. 8 - Suppose you have a 1-kb segment of cloned DNA that...Ch. 8 - Assume that a mutation affects the gene for each...Ch. 8 - 8.29 The DNA sequence below gives the first base...Ch. 8 - 8.30 Genomic DNA from a mouse is isolated,...Ch. 8 - 8.31 A portion of a human gene is isolated from...
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- RNAP can access the lacz promoter irrespective of whether CAP-CAMP is binding the CAP O True O Falsearrow_forwardName the lambda promoters whose expression is regulated by the cro protein. For each promoter you named, is cro an activator or a repressor of transcription from that promoter?arrow_forwardIIVY is a LysR regulator, and it helps control transcription of a neighboring gene, ilvC. IlvY can either bend the DNA and block RNAP's access to ilvC's -35 promoter site, or it can allow access to the ilvC -35 site, thereby promoting ilvC transcription. What determines whether llvY is repressing or activating transcription from the ilvC promoter? The presence of the co-inducer acetolactate - acetolactate binds to llvY and changes llvY's shape such that it doesn't block the -35 of the ilvC promoter. IlvY represses ilvC transcription when the IlvC protein is bound to llvY, and it activates ilvC transcription when the lvC protein is not present to bind to llvY. The presence of the co-inducer valine - when valine is present, it binds llvY and causes llvY to repress transcription from the ilvC promoter. The presence of the co-inducer acetolactate - acetolactate induces negative supercoiling at the ilvC promoter, which represses ilvC transcription.arrow_forward
- Explain the process of transcription in eukaryotic systems by considering the CDK9 gene (search more information about the function of CDK9 in relation to RNA polymerase II). If CDK9 is an example of a gene to be transcribed, explain from initiation, elongation, to termination with proteins involved, by including the important general transcription factors, mention which RNA polymerase.arrow_forwardNegative supercoiling of DNA favors the transcription of genes because it facilitates unwinding. However, not all promoter sites are stimulated by negative supercoiling. The promoter site for topoisomerase II itself is a noteworthy exception. Negative supercoiling decreases the rate of transcription of this gene. Propose a possible mechanism for this effect and suggest a reason why it may occur.arrow_forwardMost eukaryotic promoters have binding sites for several different transcription factors, and the frequency with which transcription is initiated at a promoter depends on the specific combination of transcriptional regulators bound to their binding sites in that promoter. Transcription of the slither gene in garter snakes is regulated by the transcriptional activators Python and Boa and the transcriptional repressor Sidewinder. Each of these proteins has one binding site in the slither promoter; the affinity of Boa for its binding site is 30 times higher than the affinity of Python for its binding site and 6 times higher than the affinity of Sidewinder for its binding site. Under conditions where Sidewinder is 10 times more abundant than Python, and Python is 3 times as abundant as Boa, would you expect transcription of the slither gene to be activated or repressed? Show or briefly explain how/why you predicted the outcome you chose.arrow_forward
- Gal4 is a transcription factor that activates transcription of galactose metabolism genes in yeast. These genes are ‘turned on’ when yeast cells need to metabolize galactose. To identify promoter sequences necessary for regulation of transcription of GAL1, reporter gene fusions were made and introduced into yeast cells. Deletions of GAL1 promoter were cloned upstream of LacZ gene. β-Galactosidase activity was measured in presence of galactose. Shown below is a representation of the results obtained. In the diagrams below (not to scale!): • Construct 1 contains ~ 130bp of the promoter, which is predicted to have all the predicted/putative proximal promoter elements (indicated by the solid boxes) needed to regulate transcription of GAL1.• The stippled box is the core promoter.• The arrow represents the transcriptional start site for the reporter gene Lac Z• Number of + signs represents level of transcription• Star represents a mutation in DNA sequence at that location (few nucleotides…arrow_forwardBriefly name and explain five mechanisms by which transcription factors activate transcription, with specific reference to targets in the basal transcription complexarrow_forwardMany promoter regions contain CAAT boxes containing consensus sequences CAAT or CCAAT approximately 70 to 80 bases upstream from the transcription start site. How might one determine the influence of CAAT boxes on the transcription rate of a given gene?arrow_forward
- There are similarities and differences during regulation of gene expression in both prokaryotes and eukaryotes. Promoters, transcription factors and RNA polymerase are essential elements in transcription but their properties and function may differ.a) Predict the outcome or consequences of mRNA transcription by RNA polymerase II in eukaryote without the presence of transcription factors (TF).arrow_forwardMutations in bacterial promoters may increase or decrease therate of gene transcription. Promoter mutations that increasetranscription are termed up-promoter mutations, and those thatdecrease transcription are termed down-promoter mutations.The sequence of the −10 site of the promoter for the lac operonis TATGTT (see Figure 14.5). Would you expect each of thefollowing mutations to be an up-promoter or down-promotermutation?A. TATGTT to TATATTB. TATGTT to TTTGTTC. TATGTT to TATGATarrow_forwardDescribe the major differences between transcription initiation and promoters in prokaryotes and eukaryotes.arrow_forward
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