A. Below is a small 2 exon long gene. The exons are underlined, and the 22 nucleotide long intron is the non-underlined sequence between the exons. TAG, TAA, and TGA are stop codons.

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A. Below is a small 2 exon long gene. The exons are underlined, and the 22 nucleotide long intron is the non-underlined sequence between the exons. TAG, TAA, and TGA are stop codons.

5’-TAGTGTATTGACATGATAGAAGCACTCACTATATTCTGACGTGCGACTATGCGTGGGGTTAGGT

ATTGTGCTGACTTTTCTCAGGTGGCCCGTATAGGCTAAGCTGCGCATCGCCGCTAGTCGCTCAGTTCCGC

TGGCGGCATTTTAACTTTCTTTAATGAATGCGGGCATATTTAATACGCGCTATGCGCATCGTATGCGAT-3’

1) What are the first five deoxyribonucleotides of the DNA template strand read by RNA polymerase in the 3’ to 5’ direction?

3'-____ -5'

2) What are the first five ribonucleotides of the mRNA transcript of this gene ?

5'-____-3'

3) What are the first five ribonucleotides following exon 1 in the mature mRNA transcript?

5'-_____-3'

4) What is the 5' UTR of the mature mRNA transcript in ribonucleotides?

5'-_____-3'

5A) What are the first five ribonucleotides of the 3' UTR?

5'-_____-3'

B) What are the last five ribonucleotides of the 3' UTR?

5'-______-3'

6) How many amino acids are in the protein encoded by the mRNA?

____

7) Using a codon chart (posted under the Translation module in Moodle), translate the mRNA transcript into protein, using the single letter amino acid code and no spaces.

N terminus-_____-C terminus

8) The bolded "A" nucleotide near the beginning of line 2 is the adenine in the intron that is responsible for forming the lariat during splicing. It is thus part of the consensus splicing motif.

A) If this is mutated to G, what are the 5 ribonucleotides following exon 1 in the mature mRNA transcript?

5'-_____ -3'

B) Does this mutation result in a frame shift?

Answer YES or NO

C) How many amino acids are in the protein encoded by the mRNA following this mutation?

_____

D) Using a codon chart (posted under the Translation module in Moodle), translate the mRNA transcript with the mutation described in 8A into protein, using the single letter amino acid code and no spaces.

N terminus-_____-C terminus

9) In another mutation from the original wild-type sequence, the bolded G in the middle of the second line is mutated to A.

A)How many amino acids are in the protein encoded by the mRNA?

______

B) Using a codon chart (google it), translate the mRNA transcript with the mutation described in 9 into protein, using the single letter amino acid code and no spaces.

N terminus-_____-C terminus

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