UDP-glucose412. pathwayglycogenamino acid9. metaboliteATP + HCO₂glu'NH+& metaboliteornithine7. pathwaycitrullineglucose-1-phosphate11. pathwayureaglucose-6-phosphate20. pathway10. reaction19. enzymeoxaloacetatepyruvatefum arate6. pathwayacetyl COA17. pathway14 & 15. reducedcoenzymes5. pathwayADP + P4. reduced coenzyme18. metabolite6-phosphoglucono-d-lactonefatty acyl COA3. pathwayATPfatty acid biosynthesisacetone2. pathway1. final product16. final oxidized productH₂O13. metabolite

Metabolic pathways are the biochemical pathways that involve both catabolic and anabolic…

Answered: UDP- glucose 4 12. pathway glycogen…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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8. The structure of citrate is shown below. The carbon atoms in this citrate are numbered 1 to 6. Assume that carbon atoms 1 and 6 are the two carbon atoms to be given off as CO₂ in the citric acid cycle. Which carbon atoms in the shown structure are came from acetyl-CoA? 'COOH 21 HO-³C-COOH I HCH₂ 5 COOH A. 1 and 2 B. 2 and 3 C. 3 and 6 D. 3 and 4 E. 4 and 5
2. Regarding the glycolysis metabolic pathways covered in class: A. In the EMP metabolic pathway, what chemical is catabolized to form pyruvate? (1 step away) B. There are two products of step 4 in the EMP pathway. If they were not phosphorylated, how would you describe these as monosaccharides (for example, an aldohexose and a ketopentose)? C. In the TCA Cycle, what chemical is produced by catabolism of isocitrate? (1 step away) D. Describe the major differences between primary, secondary and partial oxidation metabolism in terms of cell growth rate, (ii) oxygen consumption rate, and (iii) products formed.
2. Regarding the glycolysis metabolic pathways covered in class: A. In the EMP metabolic pathway, what chemical is produced by anabolism of pyruvate? (1 step away) B. There are two products of step 4 in the EMP pathway. If they were not phosphorylated, how would you describe these as monosaccharides (for example, an aldohexose and a ketopentose)? C. In the TCA Cycle, what chemical is produced by catabolism of isocitrate? (1 step away) D. Describe the major differences between primary, secondary and partial oxidation metabolism in terms of (i) cell growth rate, (ii) oxygen consumption rate, and (iii) products formed.
Across electrons and another loses electrons 2. 13 4 19.) first step in respiration converts glucose to pyruvate 20.) process in inner mitochondrial membrane that produces majority of ATP for cel (3 words 7 18 6. 10 11 12 13 14 Down not require oxygen 15 12.) process of forming ATP from ADP & P through electron transfer by using a proton pump across the mitochondrial membrane 16 17 18 19 17.) final electron acceptor in electron transport chain aerobic respiration 20 5.
3.) As mentioned in the March1 outline a critical step in the glycolysis metabolic pathway (conversion for glucose to pyruvate that produces 2 ATP's) is the attachment of dihydroxyacetone phosphate to an isomerase enzyme via an iminium bridge (step1). There is a second step that takes the imine to the enamine that sets up the C-C formation reaction with an enol that you'll cover in two weeks. Show the mechanism for steps 1 (mild acid catalysis) and 2 (draw resonance forms for the iminium cation). In your mechanism, show the intermediate hemiaminal (carbinolamine). Step 2 may address one of the questions asked in Wednesday's class about the water taking out the N-H proton of the iminium cation versus a C-H proton? CH₂OPO3² E-NH₂ + O=C (step 1) CH₂OH Dihydroxyacetone phosphate Iminium (+) cation intermediate (step 2) Enamine (Enol) Intermediate H CH₂OPO32- E-N-C H C. OH H₂O E
7. Complete the scheme for isocitrate dehydrogenase. Name the reactant and product. Draw and name the intermediate. COOH HIC H H-C -COOH HO-C-H COOH NAD(P)* NAD(P) H +H+ CO₂ بر COOH HIC-H HIC-H C=O COOH
1. Which of the following TCA cycle intermediates is also a metabolite in gluconeogenesis? a. Oxaloacetate b. Pyruvate c. Citrate d. Succinate e. Succinyl CoA
19. Which of the following statements is true for the shown reactions? i C-S-COA CH₂ H₂C-C-OH CH₂ coo W Coo CH₂ C=0 I Acetyl-CoA CH3 x 214 Coo- 1 CH ₂ I CHOH CH3 Y A. Deficiency of oxaloacetate stimulates the formation of X and y B. Insulin signaling stimulates the formation of X and Y C. Both A and B D. Neither A nor B
3. Answer the following questions about the metabolic pathway shown below: glutamate dehydrogenase e NH3 0-C-C-cH2-CH2-C- 0-C-CH-CH2-CH2-C-O + H,O + NAD + NH + NADH + H (a) Label the correct substances as the substrate, enzyme, and co-enzyme. (b) Which of the six classes does the enzyme of this reaction belong to? Why? (c) What is the name of the first molecule in this reaction? (d) Which metabolic pathway is this reaction likely to be a part of? A. glycolysis B. deamination C. beta-oxidation D. fermentation
11. Refer to the figure below. нн Н `NH2 NH2 N' N- 2e-+H* R NAD+ NADH NAD+ functions as a coenzyme in many enzyme-catalyzed reactions. The changes that take place in this coenzyme are the same for all of these reactions and are illustrated in the figure. It is likely that, in these reactions, NAD+ functions as an electron acceptor (reducing agent) in redox reactions. functions as an electron donor (oxidizing agent) in redox reactions. functions as a base in acid-base catalytic mechanisms. functions as an electron donor (oxidizing agent) in redox reactions. functions as an electron acceptor (oxidizing agent) in redox reactions. +Z-
3. The enzyme enolase catalyzes the removal of one water molecule ("dehydration") of 2- Phosphoglycerate (2-PGA). The numbering scheme of the enolase carbons is labeled HC-0-P-O + H20 on 2-PGA. || CH2 HO-CH2 2-Phosphoglycerate Phosphoenolpyruvate Part of the catalytic mechanism is as follows: Mg2+ PO?- Mg?+ PO? 'o. Ó H Mg?+ Mg²+; PO? :-C-H C=C-C-H OH OH Нон Enolase но но H-N*-H Lys345 Lys345 Glu211 Glu211 2-Phosphoglycerate bound to enzyme Enolate intermediate Phosphoenolpyruvate а. Draw the mechanism of the reaction by adding arrows to show how electrons move. Mg2+ PO?- Mg2+ po PO H H Mg2+ С -с-с-н Mg2+ C=c-C-H H OH OH Enolase H. H-N-H но но .. H-N-H Lys345 Lys345 Glu211 Glu211 2-Phosphoglycerate bound to enzyme Enolate intermediate Mg?+ PO O. он Mg2+: PO? c=C-C-H OH HOH H но C=C H-N*-H Lys345 Glu211 Enolate intermediate Phosphoenolpyruvate
4) Phosphofructokinase (PFK) is a highly regulated enzyme in glycolysis. ADP (and also AMP - adenosine monophosphate) bind to allosteric sites on PFK's structure, causing additional active sites (fructose-6-phosphate binding sites) to open. Conversely, ATP and PEP (phosphoenolpyruvate) bind to different allosteric sites, resulting in PFK's active sites closing. a) How does an allosteric activator work? What is the allosteric activator? When would it be important for PFK to be activated? Function: Allosteric Activator(s): Importance: b) How does an allosteric inhibitor work? What is the allosteric inhibitor? When would it be important for PFK to be inhibited? Function: Allosteric Inhibitor(s): Importance: c) How does this relate to the ideas of homeostasis and why does it make sense to control this system homeostatically? Use a specific example to make your comparison.

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