(c2) Identify the active site residues that make hydrogen bonds and electrostatic interac- tions with the oxygen atoms of the carboxylate groups of maleate in the diagram above. Identify the carboxylate groups according to the numbering in the diagram of maleate above. Indicate the hydrogen donor groups of the active site residues. (C3) Compare and draw the structures of L-Arg and L-Lys. On the basis of the diagram why does replacement of an arginine for a lysine have an effect on substrate binding to AspAT? (c4) Of the mutant enzymes in the table above, substitution of Arg292 by lysine is always asso- ciated with greatly weakened binding affinity of the substrate and decreased specificity. In the diagram above, examine the structural relationships between the two carboxylate groups of maleate with Arg- 292 and Arg386. Consider the change in binding relationships that maleate must undergo when Arg- 292 is mutated into a lysine in the AspAT(Lys292Arg386) enzyme and in the AspAT-(Lys292Lys386) enzyme. On the basis of the diagram above, describe the structural changes that must occur in each mutant giving rise to weaker substrate binding.
(c2) Identify the active site residues that make hydrogen bonds and electrostatic interac- tions with the oxygen atoms of the carboxylate groups of maleate in the diagram above. Identify the carboxylate groups according to the numbering in the diagram of maleate above. Indicate the hydrogen donor groups of the active site residues. (C3) Compare and draw the structures of L-Arg and L-Lys. On the basis of the diagram why does replacement of an arginine for a lysine have an effect on substrate binding to AspAT? (c4) Of the mutant enzymes in the table above, substitution of Arg292 by lysine is always asso- ciated with greatly weakened binding affinity of the substrate and decreased specificity. In the diagram above, examine the structural relationships between the two carboxylate groups of maleate with Arg- 292 and Arg386. Consider the change in binding relationships that maleate must undergo when Arg- 292 is mutated into a lysine in the AspAT(Lys292Arg386) enzyme and in the AspAT-(Lys292Lys386) enzyme. On the basis of the diagram above, describe the structural changes that must occur in each mutant giving rise to weaker substrate binding.
Biochemistry
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ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
Section: Chapter Questions
Problem 1P
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Step 1: Significance of binding interactions between substrate and active site residues
VIEWStep 2: (c1) Structural similarities between L-Aspartate and maleate
VIEWStep 3: (c2) Active site residues interacting with maleate
VIEWStep 4: (c3) Comparing structures of L-Lysine & L-Arginine and the effect of R to K mutation
VIEWStep 5: (c4) Structural relationships between mutants and maleate
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