(adapted from Bao, Ông, ..., Mootha, 2016, eLife) negative control Replicate 1 Replicate 2 0.1 u toep-z (a) Carbon groups come in various oxidation states, and enzymes utilize different cofactors to transfer single carbons in these different states. What are the key cofactors involved in single carbon transfer, and which oxidation states do they each recognize? (b) The data indicate that in the cancer cells homocysteine is highly depleted relative to the control cells. What role does homocysteine play in one-carbon metabolism, specifically with respect to two of the cofactors described above? (c) The data also indicate that serine is enriched in the cancer cells relative to the control cells. Given that homocysteine levels are low in the cancer cells, what does the increased abundance of serine suggest about the overall state of amino acid metabolism in the cancer cells? Metabolite abundance (cancer cells / control cells) glutathione(reduced) choline a-glycerophos hate cystath nine alanine lutarate creatin arginine acetylglyci pantother N-carban C44:0 te bamoyl-BAG 1-B-alanir fructose/glucosU,%S OxYcytidine C52-3 TAG oadipate trate 2-amin, Dse socitrate uipun homocysteine homocystine

Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
Section: Chapter Questions
Problem 1P
icon
Related questions
icon
Concept explainers
Question
3.
You are growing cancer cells in culture and have evidence that the cancer cells have mis-
regulated amino acid metabolism to support their malignant growth. Transferring single carbon groups
is a key task of enzymes involved in amino acid catabolism, and you specifically hypothesize that the
cancer cells have altered one-carbon metabolism. To test this, you performed the metabolite profiling
analysis shown below.
Transcribed Image Text:3. You are growing cancer cells in culture and have evidence that the cancer cells have mis- regulated amino acid metabolism to support their malignant growth. Transferring single carbon groups is a key task of enzymes involved in amino acid catabolism, and you specifically hypothesize that the cancer cells have altered one-carbon metabolism. To test this, you performed the metabolite profiling analysis shown below.
(adapted from Bao,
Ong, ..., Mootha,
2016, eLife)
negative control
Replicate 1
Replicate 2
(a) Carbon groups come in various oxidation states, and enzymes utilize different cofactors to transfer
single carbons in these different states. What are the key cofactors involved in single carbon transfer,
and which oxidation states do they each recognize?
(b) The data indicate that in the cancer cells homocysteine is highly depleted relative to the control
cells. What role does homocysteine play in one-carbon metabolism, specifically with respect to two of
the cofactors described above?
(c) The data also indicate that serine is enriched in the cancer cells relative to the control cells. Given
that homocysteine levels are low in the cancer cells, what does the increased abundance of serine
suggest about the overall state of amino acid metabolism in the cancer cells?
Metabolite abundance
(cancer cells / control cells)
serine
glutathione(reduced)
taurine
choline
a-glycerophosphate
cystathionine
alanine
asparaginDA
arnitine
a-hyc
anthranilic acid
2-hydroxyglutarate
creatine
lactațe
glutamine
pyroglūtamic acid\
uracil
arginine
acetyigeucine
ylglycine
histidine
pantothenate
C44:0 TAG
N-carbamoyl-B-alanine
hippurate
fructose/glucose/galactose
thyroxine
thymine
pyruvate
ornithir
ne
xanthine
homogentistate
line
2-deoxy3 TAG
sytidine
glucose
lactose
2-aminoadipate
citrate
midine
uridine
homocysteine
homocystine
Transcribed Image Text:(adapted from Bao, Ong, ..., Mootha, 2016, eLife) negative control Replicate 1 Replicate 2 (a) Carbon groups come in various oxidation states, and enzymes utilize different cofactors to transfer single carbons in these different states. What are the key cofactors involved in single carbon transfer, and which oxidation states do they each recognize? (b) The data indicate that in the cancer cells homocysteine is highly depleted relative to the control cells. What role does homocysteine play in one-carbon metabolism, specifically with respect to two of the cofactors described above? (c) The data also indicate that serine is enriched in the cancer cells relative to the control cells. Given that homocysteine levels are low in the cancer cells, what does the increased abundance of serine suggest about the overall state of amino acid metabolism in the cancer cells? Metabolite abundance (cancer cells / control cells) serine glutathione(reduced) taurine choline a-glycerophosphate cystathionine alanine asparaginDA arnitine a-hyc anthranilic acid 2-hydroxyglutarate creatine lactațe glutamine pyroglūtamic acid\ uracil arginine acetyigeucine ylglycine histidine pantothenate C44:0 TAG N-carbamoyl-B-alanine hippurate fructose/glucose/galactose thyroxine thymine pyruvate ornithir ne xanthine homogentistate line 2-deoxy3 TAG sytidine glucose lactose 2-aminoadipate citrate midine uridine homocysteine homocystine
Expert Solution
steps

Step by step

Solved in 2 steps

Blurred answer
Knowledge Booster
Metabolic pathways
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, biochemistry and related others by exploring similar questions and additional content below.
Similar questions
  • SEE MORE QUESTIONS
Recommended textbooks for you
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781319114671
Author:
Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:
W. H. Freeman
Lehninger Principles of Biochemistry
Lehninger Principles of Biochemistry
Biochemistry
ISBN:
9781464126116
Author:
David L. Nelson, Michael M. Cox
Publisher:
W. H. Freeman
Fundamentals of Biochemistry: Life at the Molecul…
Fundamentals of Biochemistry: Life at the Molecul…
Biochemistry
ISBN:
9781118918401
Author:
Donald Voet, Judith G. Voet, Charlotte W. Pratt
Publisher:
WILEY
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781305961135
Author:
Mary K. Campbell, Shawn O. Farrell, Owen M. McDougal
Publisher:
Cengage Learning
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781305577206
Author:
Reginald H. Garrett, Charles M. Grisham
Publisher:
Cengage Learning
Fundamentals of General, Organic, and Biological …
Fundamentals of General, Organic, and Biological …
Biochemistry
ISBN:
9780134015187
Author:
John E. McMurry, David S. Ballantine, Carl A. Hoeger, Virginia E. Peterson
Publisher:
PEARSON