(adapted from Bao, Ông, ..., Mootha, 2016, eLife) negative control Replicate 1 Replicate 2 0.1 u toep-z (a) Carbon groups come in various oxidation states, and enzymes utilize different cofactors to transfer single carbons in these different states. What are the key cofactors involved in single carbon transfer, and which oxidation states do they each recognize? (b) The data indicate that in the cancer cells homocysteine is highly depleted relative to the control cells. What role does homocysteine play in one-carbon metabolism, specifically with respect to two of the cofactors described above? (c) The data also indicate that serine is enriched in the cancer cells relative to the control cells. Given that homocysteine levels are low in the cancer cells, what does the increased abundance of serine suggest about the overall state of amino acid metabolism in the cancer cells? Metabolite abundance (cancer cells / control cells) glutathione(reduced) choline a-glycerophos hate cystath nine alanine lutarate creatin arginine acetylglyci pantother N-carban C44:0 te bamoyl-BAG 1-B-alanir fructose/glucosU,%S OxYcytidine C52-3 TAG oadipate trate 2-amin, Dse socitrate uipun homocysteine homocystine
Electron Transport Chain
The electron transport chain, also known as the electron transport system, is a group of proteins that transfer electrons through a membrane within mitochondria to create a gradient of protons that drives adenosine triphosphate (ATP)synthesis. The cell uses ATP as an energy source for metabolic processes and cellular functions. ETC involves series of reactions that convert redox energy from NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen (H)) and FADH2(flavin adenine dinucleotide (FAD)) oxidation into proton-motive force(PMF), which is then used to synthesize ATP through conformational changes in the ATP synthase complex, a process known as oxidative phosphorylation.
Metabolism
Picture a campfire. It keeps the body warm on a cold night and provides light. To ensure that the fire keeps burning, fuel needs to be added(pieces of wood in this case). When a small piece is added, the fire burns bright for a bit and then dies down unless more wood is added. But, if too many pieces are placed at a time, the fire escalates and burns for a longer time, without actually burning away all the pieces that have been added. Many of them, especially the larger chunks or damp pieces, remain unburnt.
Cellular Respiration
Cellular respiration is the cellular process involved in the generation of adenosine triphosphate (ATP) molecules from the organic nutritional source obtained from the diet. It is a universal process observed in all types of life forms. The glucose (chemical formula C6H12O6) molecules are the preferred raw material for cell respiration as it possesses a simple structure and is highly efficient in nature.
![3.
You are growing cancer cells in culture and have evidence that the cancer cells have mis-
regulated amino acid metabolism to support their malignant growth. Transferring single carbon groups
is a key task of enzymes involved in amino acid catabolism, and you specifically hypothesize that the
cancer cells have altered one-carbon metabolism. To test this, you performed the metabolite profiling
analysis shown below.](/v2/_next/image?url=https%3A%2F%2Fcontent.bartleby.com%2Fqna-images%2Fquestion%2F24b1d657-8a50-4e7c-90a8-6e71b5a64daf%2F7edc6e96-a589-40a4-8388-ed4f1b2fc49c%2F851v3k_processed.png&w=3840&q=75)
![(adapted from Bao,
Ong, ..., Mootha,
2016, eLife)
negative control
Replicate 1
Replicate 2
(a) Carbon groups come in various oxidation states, and enzymes utilize different cofactors to transfer
single carbons in these different states. What are the key cofactors involved in single carbon transfer,
and which oxidation states do they each recognize?
(b) The data indicate that in the cancer cells homocysteine is highly depleted relative to the control
cells. What role does homocysteine play in one-carbon metabolism, specifically with respect to two of
the cofactors described above?
(c) The data also indicate that serine is enriched in the cancer cells relative to the control cells. Given
that homocysteine levels are low in the cancer cells, what does the increased abundance of serine
suggest about the overall state of amino acid metabolism in the cancer cells?
Metabolite abundance
(cancer cells / control cells)
serine
glutathione(reduced)
taurine
choline
a-glycerophosphate
cystathionine
alanine
asparaginDA
arnitine
a-hyc
anthranilic acid
2-hydroxyglutarate
creatine
lactațe
glutamine
pyroglūtamic acid\
uracil
arginine
acetyigeucine
ylglycine
histidine
pantothenate
C44:0 TAG
N-carbamoyl-B-alanine
hippurate
fructose/glucose/galactose
thyroxine
thymine
pyruvate
ornithir
ne
xanthine
homogentistate
line
2-deoxy3 TAG
sytidine
glucose
lactose
2-aminoadipate
citrate
midine
uridine
homocysteine
homocystine](/v2/_next/image?url=https%3A%2F%2Fcontent.bartleby.com%2Fqna-images%2Fquestion%2F24b1d657-8a50-4e7c-90a8-6e71b5a64daf%2F7edc6e96-a589-40a4-8388-ed4f1b2fc49c%2Frerjqld_processed.png&w=3840&q=75)
![](/static/compass_v2/shared-icons/check-mark.png)
Step by step
Solved in 2 steps
![Blurred answer](/static/compass_v2/solution-images/blurred-answer.jpg)
![Biochemistry](https://www.bartleby.com/isbn_cover_images/9781319114671/9781319114671_smallCoverImage.jpg)
![Lehninger Principles of Biochemistry](https://www.bartleby.com/isbn_cover_images/9781464126116/9781464126116_smallCoverImage.gif)
![Fundamentals of Biochemistry: Life at the Molecul…](https://www.bartleby.com/isbn_cover_images/9781118918401/9781118918401_smallCoverImage.gif)
![Biochemistry](https://www.bartleby.com/isbn_cover_images/9781319114671/9781319114671_smallCoverImage.jpg)
![Lehninger Principles of Biochemistry](https://www.bartleby.com/isbn_cover_images/9781464126116/9781464126116_smallCoverImage.gif)
![Fundamentals of Biochemistry: Life at the Molecul…](https://www.bartleby.com/isbn_cover_images/9781118918401/9781118918401_smallCoverImage.gif)
![Biochemistry](https://www.bartleby.com/isbn_cover_images/9781305961135/9781305961135_smallCoverImage.gif)
![Biochemistry](https://www.bartleby.com/isbn_cover_images/9781305577206/9781305577206_smallCoverImage.gif)
![Fundamentals of General, Organic, and Biological …](https://www.bartleby.com/isbn_cover_images/9780134015187/9780134015187_smallCoverImage.gif)