EBK BIOLOGY
EBK BIOLOGY
10th Edition
ISBN: 8220100474729
Author: Martin
Publisher: Cengage Learning US
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Chapter 3, Problem 12TYU

PREDICT Do any of the amino acid side groups shown below have the potential to form an ionic bond with any of the other side groups shown? If so, which pair(s) could form such an association?

(a)    —CH3

(b)    —CH2 — COO

(c)    —CH2 — CH2 — NH3+

(d)    —CH2 — CH2 — COO

(e)    —CH2 — OH

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Φ and ψ in the Ramachandran plot (below) are: a) Rotational angles around the bond between the α-carbon and N-H (Φ) and C=O (ψ). b) Amino acid solubility in octanol (Φ) and water (ψ). c) Hydrogen bond angles in α-helices (Φ) and β-sheets (ψ). d) Amino acid solubility in water (Φ) and octanol (ψ).
As you increase the number of alanine residues in the oligopeptide chain: The pKas of the carboxylate groups will [increase, decrease, stay the same] The pKas of the amino groups will [increase, decrease, stay the same]
The amino acid arginine ionizes according to the following scheme: NH, NH2 NH2 H NH, C=N C=N C=N C=N-H pk = 2.17 -H pK. = 8.99 -H pK = 125 -H* H. NH NH NH NH H (CH,)a H (CH), +H* (CH)a (CH,)a H,N-C-coo- +H* +H* H-N*-C-COOH H-N-C-Co- H,N-C-co- H. нн H. H II II IV (a) Calculate the isoelectric point of arginine. You can neglect contributions from form I. Why? (b) Calculate the average charge on arginine when pH = 9.20. (Hìnt: Find the average charge for each ionizable group and sum these together.) (c) Is the value of average charge you calculated in part b reasonable, given the pl you calculated in part a? Explain your answer.

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