Suppose you had isolated a new transcription factor and wanted to know which genes this protein might regulate. Is there any way that you could use a cDNA microarray of the type shown in the picture to approach this question?

Human Anatomy & Physiology (11th Edition)
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ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
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Suppose you had isolated a new transcription factor and wanted to know which genes this protein might regulate. Is there any way that you could use a cDNA microarray of the type shown in the picture to approach this question?
Yeast cells growing in
glucose-rich medium
Yeast cells growing in
ethanolrich medium
lacking glucose
Extract and
Extract and
purify MRNAS
purify MRNAS
MRNAS
MRNAS
Synthesize CDNAS
containing green
fuorescent dye
Cy3
Synthesize CDNAS
containing red
luorescent dye
Cy5
(b)
Glucose
CDNAS
CDNAS
Cell density
Mix two CDNA populations
Ethanol
Incubate
microarray
with mixed
DNA
population
+
0 d
5 d
10 d
15 c
00000000
loo00000
0000000.
loo000000
00000000
b00000O.
lo0000000
000000O.
(c)
CIT1
ACO1
IDH1
IDH2
KGD1
KGD2
LSC1
LSC2
|SDH1
SDH2
SDH3
SDH4
FUM1
MDH1
Completed DNA microarray
-Application of DNA
spot onto slide
Spot DNA from
each well onto slide
DNA clones
(each well contains a
different yeast gene)
(a)
>16X
| >16X
induced
repressed
(d)
Transcribed Image Text:Yeast cells growing in glucose-rich medium Yeast cells growing in ethanolrich medium lacking glucose Extract and Extract and purify MRNAS purify MRNAS MRNAS MRNAS Synthesize CDNAS containing green fuorescent dye Cy3 Synthesize CDNAS containing red luorescent dye Cy5 (b) Glucose CDNAS CDNAS Cell density Mix two CDNA populations Ethanol Incubate microarray with mixed DNA population + 0 d 5 d 10 d 15 c 00000000 loo00000 0000000. loo000000 00000000 b00000O. lo0000000 000000O. (c) CIT1 ACO1 IDH1 IDH2 KGD1 KGD2 LSC1 LSC2 |SDH1 SDH2 SDH3 SDH4 FUM1 MDH1 Completed DNA microarray -Application of DNA spot onto slide Spot DNA from each well onto slide DNA clones (each well contains a different yeast gene) (a) >16X | >16X induced repressed (d)
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