PCR primers are designed to only replicate the N gene sequence of the viral genome. Part of the N sequence we want to amplify is shown below. Typically, you design two primers, one to bind to each strand of the dsDNA. Copies are made from each strand so you get twice as much DNA from the PCR process. Potential primer locations are noted by the nucleotide sequences shown below. The PCR needs to make copies of the nucleotides shown in the middle (“87 nucleotides”). Remember the direction that DNA polymerase synthesizes new DNA strands. Select the two locations for the primers to bind and then fill in the correct sequence below the DNA sequence shown. You should have selected one location on each strand. Indicate the direction that the DNA polymerase (Taq polymerase) will move after binding to the primers in the attached image

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PCR primers are designed to only replicate the N gene sequence of the viral genome. Part of the N sequence we want to amplify is shown below. Typically, you design two primers, one to bind to each strand of the dsDNA. Copies are made from each strand so you get twice as much DNA from the PCR process.

Potential primer locations are noted by the nucleotide sequences shown below.

The PCR needs to make copies of the nucleotides shown in the middle (“87 nucleotides”).

Remember the direction that DNA polymerase synthesizes new DNA strands. Select the two locations for the primers to bind and then fill in the correct sequence below the DNA sequence shown. You should have selected one location on each strand.

Indicate the direction that the DNA polymerase (Taq polymerase) will move after binding to the primers in the attached image 

**DNA Sequence with Annotations**

This image shows a pair of DNA strands with annotations indicating a segment of additional nucleotides.

**Top Strand (5' to 3'):**
- Initial sequence: 5'-CACATTGCACCCGCAATC
- Followed by: 87 additional nucleotides
- Final sequence: CAAGCCTCTTCTGTTCTC-3'

**Bottom Strand (3' to 5'):**
- Initial sequence: 3'-GTGTAACCGTGGCGGTTAG
- Followed by: 87 additional nucleotides
- Final sequence: GTTCGGAGAAGAGCAAGGAG-5'

**Explanation:**
The dashed line represents a section where 87 additional nucleotides are present within both DNA strands. These sequences are indicative of a DNA region with specific bases aligned and matched between complementary strands. Understanding the arrangement of these sequences provides insight into DNA pairing and genetic information storage.
Transcribed Image Text:**DNA Sequence with Annotations** This image shows a pair of DNA strands with annotations indicating a segment of additional nucleotides. **Top Strand (5' to 3'):** - Initial sequence: 5'-CACATTGCACCCGCAATC - Followed by: 87 additional nucleotides - Final sequence: CAAGCCTCTTCTGTTCTC-3' **Bottom Strand (3' to 5'):** - Initial sequence: 3'-GTGTAACCGTGGCGGTTAG - Followed by: 87 additional nucleotides - Final sequence: GTTCGGAGAAGAGCAAGGAG-5' **Explanation:** The dashed line represents a section where 87 additional nucleotides are present within both DNA strands. These sequences are indicative of a DNA region with specific bases aligned and matched between complementary strands. Understanding the arrangement of these sequences provides insight into DNA pairing and genetic information storage.
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Polymerase chain reaction, or PCR, is a molecular biology technique to make many copies of a specific DNA region in vitro. PCR relies on a thermostable DNA polymerase, Taq polymerase, and requires DNA primers designed specifically for the DNA region of interest. In PCR, the reaction is repeatedly cycled through a series of temperature changes, which allow many copies of the target region to be produced. PCR has many research and practical applications. It is routinely used in DNA cloning, medical diagnostics, and forensic analysis of DNA.
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