Construct the data matrix rom the DNA sequence lata from the 5 taxa. Hint: there are three variable nucleotide sites, which are the characters) position 111111 123456789012345 Taxon A ATTGCGGCCTGTATG Taxon B ATGGCGGGCTGTAAG Taxon C ATTGCGGGCTGTATG Taxon D ATTGCGGGCTGTAAG Taxon E ATGGCGGCCTGTATG taxon taxon A taxon B taxon C taxon D taxon E origin Florida C Mexico China India Brazil
Construct the data matrix rom the DNA sequence lata from the 5 taxa. Hint: there are three variable nucleotide sites, which are the characters) position 111111 123456789012345 Taxon A ATTGCGGCCTGTATG Taxon B ATGGCGGGCTGTAAG Taxon C ATTGCGGGCTGTATG Taxon D ATTGCGGGCTGTAAG Taxon E ATGGCGGCCTGTATG taxon taxon A taxon B taxon C taxon D taxon E origin Florida C Mexico China India Brazil
Biochemistry
6th Edition
ISBN:9781305577206
Author:Reginald H. Garrett, Charles M. Grisham
Publisher:Reginald H. Garrett, Charles M. Grisham
Chapter17: Metabolism: An Overview
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Problem 13P: What Art the Features of the Series of -omes? Define the following terms: a. Genome b. Transcriptome...
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Gene Expression
Gene expression is a process by which the instructions present in deoxyribonucleic acid (DNA) are converted into useful molecules such as proteins, and functional messenger ribonucleic (mRNA) molecules in the case of non-protein-coding genes.
Topic Video
Question
![Construct the data matrix
From the DNA sequence
data from the 5 taxa.
(Hint: there are three
variable nucleotide
sites, which are the
characters)
Map all three
characters onto both
mypotheses using two
Colors (same as in
Activity 6).
3
position
111111
1 2 3 4 5 6 7 8 9 0 1 2 3 4 5
ATTGCGGCCTGTATG
Taxon A
Taxon B ATGGCGGGCTGTAAG
Taxon C ATTGCGGGCTGTATG
Taxon D ATTGCGGGCTGTAAG
Taxon E
ATGGCGGCCTGTATG
1
Determine the
treelength of both
hypotheses and fill in
3
the treelength and Justify Text
minimum number of
changes in the table on
the lower right. Then
compute the CI for both
hypotheses and put a
checkmark or X to
indicate which one is
the most parsimonious
and which one is the
most accurate.
4
Character/
states
Taxon A
Use the most accurate phylogeny
to infer the origin of the new
fungal pathogen
Taxon B
Hypothesis
Treelength
Minimum
CI
Most parsimonious
Most accurate
Taxon C
Taxon D
1
taxon
taxon A
taxon B
taxon C
taxon D
taxon E
Taxon E
Minimum
2
origin
Florida (new)
Mexico
China
India
Brazil
2
Save the completed worksheet
as a pdf and upload on Blackboard
Hypothesis 1
BAC D E
character 1
Hypothesis 1
BAC D E
Hypothesis 2
BD CA E
បុប្ផ
character 2
Hypothesis 2
BD CA E
Hypothesis 1
Hypothesis 2
BAC DE BD CA E
!!
character 3
Most likely origin of
4 new fungal pathogen:
Mexico
China
India
Brazil](/v2/_next/image?url=https%3A%2F%2Fcontent.bartleby.com%2Fqna-images%2Fquestion%2Fe303a8ae-c8bb-4426-98fe-20841c401e67%2F74406415-df2a-4b98-9b69-4d134d8870b2%2Ftb33xae_processed.png&w=3840&q=75)
Transcribed Image Text:Construct the data matrix
From the DNA sequence
data from the 5 taxa.
(Hint: there are three
variable nucleotide
sites, which are the
characters)
Map all three
characters onto both
mypotheses using two
Colors (same as in
Activity 6).
3
position
111111
1 2 3 4 5 6 7 8 9 0 1 2 3 4 5
ATTGCGGCCTGTATG
Taxon A
Taxon B ATGGCGGGCTGTAAG
Taxon C ATTGCGGGCTGTATG
Taxon D ATTGCGGGCTGTAAG
Taxon E
ATGGCGGCCTGTATG
1
Determine the
treelength of both
hypotheses and fill in
3
the treelength and Justify Text
minimum number of
changes in the table on
the lower right. Then
compute the CI for both
hypotheses and put a
checkmark or X to
indicate which one is
the most parsimonious
and which one is the
most accurate.
4
Character/
states
Taxon A
Use the most accurate phylogeny
to infer the origin of the new
fungal pathogen
Taxon B
Hypothesis
Treelength
Minimum
CI
Most parsimonious
Most accurate
Taxon C
Taxon D
1
taxon
taxon A
taxon B
taxon C
taxon D
taxon E
Taxon E
Minimum
2
origin
Florida (new)
Mexico
China
India
Brazil
2
Save the completed worksheet
as a pdf and upload on Blackboard
Hypothesis 1
BAC D E
character 1
Hypothesis 1
BAC D E
Hypothesis 2
BD CA E
បុប្ផ
character 2
Hypothesis 2
BD CA E
Hypothesis 1
Hypothesis 2
BAC DE BD CA E
!!
character 3
Most likely origin of
4 new fungal pathogen:
Mexico
China
India
Brazil
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