Complete the following problems. Restriction enzymes (REs), which cut D NA at specific sequences, are classic tools in molecular biology. Because of their specificity in cutting DNA, REs can be used to "map" DNA sequences by analyzing the fragments generated upon restriction digest, as in the example shown in Figure 1. Your task is to study the circular plasmid, PMBBS, through restriction digests. You subjected the PMBBS plasmid to complete digestion by different combinations of three REs (ECORI, BamHI, and Xhol), and analyzed the results on an agarose gel, shown below. Using the data you can glean from this gel, answer the questions that follow. EcoRI BamHI Xhol DNA size ladder 3000 bp 2500 bp 2000 bp 1500 bp 1200 bp 1000 bp 900 bp 800 bp 700 bp 600 bp 500 bp 400 bp 300 bp 200 bp 100 bp "vC 100bp Plus DNA ladder from Vivantis Techvnologies "The same total amount of DNA was loaded in each lane. 1. What is the total size of the PMBBS plasmid in bp? Answer bp 2. How many cut sites on the pMBBS plasmid does each RE have? EcoRI:, BamHI:, Xhol: 3. If the pMBBS plasmid were digested with all three REs together, how many fragments would be observed, and what would be the sizes (in bp) of these fragments? Number of fragments: Sizes:

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Complete the following problems.
Restriction enzymes (RES), which cut D NA at specific sequences, are classic tools in molecular
biology. Because of their specificity in cutting DNA, REs can be used to "map" DNA sequences
by analyzing the fragments generated upon restriction digest, as in the example shown in Figure
1. Your task is to study the circular plasmid, pMBBS, through restriction digests. You subjected
the PMBBS plasmid to complete digestion by different combinations of three RES (ECORI, BamHI,
and Xhol), and analyzed the results on an agarose gel, shown below. Using the data you can glean
from this gel, answer the questions that follow.
EcoRI
BamHI
Xhol
DNA
size
ladder
3000 bp
2500 bp
2000 bp
1500 bp
1200 bp
1000 bp
900 bp
800 bo
700 bp
600 bp
500 bp
400 bp
300 bp
- 200 bp
100 bo
vC 100bp Plus DNA ladder
from Vivantis Technologies
"The same total amount of DNA was loaded in each lane.
1. What is the total size of the PMBBS plasmid in bp?
Answer:
bp
2. How many cut sites on the PMBBS plasmid does each RE have?
BamHI:
EcoRI:
Xhol:
3. If the pMBBS plasmid were digested with all three REs together, how many fragments would
be observed, and what would be the sizes (in bp) of these fragments?
Number of fragments:
Sizes:
Transcribed Image Text:l MTN ? 13:30 © 0 8% O Google Drive - online backup Open in the Drive app ОPEN Complete the following problems. Restriction enzymes (RES), which cut D NA at specific sequences, are classic tools in molecular biology. Because of their specificity in cutting DNA, REs can be used to "map" DNA sequences by analyzing the fragments generated upon restriction digest, as in the example shown in Figure 1. Your task is to study the circular plasmid, pMBBS, through restriction digests. You subjected the PMBBS plasmid to complete digestion by different combinations of three RES (ECORI, BamHI, and Xhol), and analyzed the results on an agarose gel, shown below. Using the data you can glean from this gel, answer the questions that follow. EcoRI BamHI Xhol DNA size ladder 3000 bp 2500 bp 2000 bp 1500 bp 1200 bp 1000 bp 900 bp 800 bo 700 bp 600 bp 500 bp 400 bp 300 bp - 200 bp 100 bo vC 100bp Plus DNA ladder from Vivantis Technologies "The same total amount of DNA was loaded in each lane. 1. What is the total size of the PMBBS plasmid in bp? Answer: bp 2. How many cut sites on the PMBBS plasmid does each RE have? BamHI: EcoRI: Xhol: 3. If the pMBBS plasmid were digested with all three REs together, how many fragments would be observed, and what would be the sizes (in bp) of these fragments? Number of fragments: Sizes:
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4. Draw the actual map of the PMBBS plasmid, following the style of the sample map shown in
Figure 1. Make sure you show the following information: (1) relative locations of the RE sites; (2)
size in base pairs of the segments of DNA between sites. (The map need not be drawn to scale.)
Answer: (provide a drawing)
Transcribed Image Text:l MTN 13:30 O 8% Google Drive - online backup Open in the Drive app OPEN 4. Draw the actual map of the PMBBS plasmid, following the style of the sample map shown in Figure 1. Make sure you show the following information: (1) relative locations of the RE sites; (2) size in base pairs of the segments of DNA between sites. (The map need not be drawn to scale.) Answer: (provide a drawing)
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