BHI TTGTAAAACGACGGCCAGTGAGCGCGCGTAATACGACT M13-20 primer binding site Bsp 1061 goi Primer design worksheet T7 Promoter ...KS primer binding site Primer 17 primer binding site Hind EcoRV EcoRI Pal Eco01091 Xhol Kpn Dra CACTATAGGGCGAATTGGGTACCGGGCCCCCCCTCGAGGTCGAC... Acc Xbal Smal BamHI Spel ...GGTATCGATAAGCTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGTGGAGCTC... SK primer binding site KS primer binding site... Socl Not Eagl Batx I Sac II The diagram above shows a portion of the pSK+ multicloning site. For this worksheet, you need to design primers that could be used to amplify a gene cloned into the EcoRI cloning site. There are 4 primer sites indicated on the diagram. The primers need to be designed to bind to each of the primer binding sites indicated on the diagram. Fill in the following information: Identify all possible Forward primers and write out their sequence: 5'-3' sequence
BHI TTGTAAAACGACGGCCAGTGAGCGCGCGTAATACGACT M13-20 primer binding site Bsp 1061 goi Primer design worksheet T7 Promoter ...KS primer binding site Primer 17 primer binding site Hind EcoRV EcoRI Pal Eco01091 Xhol Kpn Dra CACTATAGGGCGAATTGGGTACCGGGCCCCCCCTCGAGGTCGAC... Acc Xbal Smal BamHI Spel ...GGTATCGATAAGCTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGTGGAGCTC... SK primer binding site KS primer binding site... Socl Not Eagl Batx I Sac II The diagram above shows a portion of the pSK+ multicloning site. For this worksheet, you need to design primers that could be used to amplify a gene cloned into the EcoRI cloning site. There are 4 primer sites indicated on the diagram. The primers need to be designed to bind to each of the primer binding sites indicated on the diagram. Fill in the following information: Identify all possible Forward primers and write out their sequence: 5'-3' sequence
Human Anatomy & Physiology (11th Edition)
11th Edition
ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
Publisher:Elaine N. Marieb, Katja N. Hoehn
Chapter1: The Human Body: An Orientation
Section: Chapter Questions
Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
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Transcribed Image Text:**Primer Design Worksheet**
The diagram above shows a portion of the pSK+ multicloning site. For this worksheet, you need to design primers that could be used to amplify a gene cloned into the **EcoRI** cloning site.
There are 4 primer sites indicated on the diagram. The primers need to be designed to bind to each of the primer binding sites indicated on the diagram.
**Fill in the following information:**
**Identify all possible Forward primers and write out their sequence:**
- **Primer**
5’-3’ sequence
**Identify all possible Reverse primers and write out their sequence:**
- **Primer**
5’-3’ sequence
---
**Diagram Explanation:**
- The graphic shows a DNA sequence with labeled regions including restriction enzyme sites (e.g., **BssH II**, **Nhe I**, **EcoRI**), a **T7 Promoter**, and primer binding sites (**M13 -20**, **T7**, **KS**, **SK**).
- The sequence is labeled at several restriction sites with their enzyme names, illustrating where cuts can be made for gene cloning.
- Arrows indicate the orientation of the **T7 promoter** and primer binding sites, showing which direction the primers should be designed to bind.
- The goal is to use this map to determine forward and reverse primers for amplifying the gene at the EcoRI site.
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