The glucose/glucose-6-phosphate substrate cycle involves distinct reactionsof glycolysis and gluconcogenesis that interconvert these two metabolites.Assume that under physiological conditions, [ATP] = [ADP] and[Pi] =1 mM.Consider the following glycolytic reaction catalyzed by hexokinase:ATP + glucose = AG' = -16.7 kJ/molADP + glucose-6-phosphate(a) Calculate the equilibrium constant (K) for this reaction at 298 K, andfrom that, calculate the maximum [glucose-6-phosphate]/[glucose] ratiothat would exist under conditions where the reaction is still thermody-namically favorable.(b) The reverse of this interconversion in gluconeogenesis is catalyzed byglucose-6-phosphatase:glucose-6-phosphate + H,0 =glucose + P, AGr = -13.8 kJ/molK= 262 for this reaction. Calculate the maximum ratio of [glucose]/[glucose-6-phosphate] that would exist under conditions where thereaction is still thermodynamically favorable.(c) Under what cellular conditions would both directions in the substratecycle be strongly favored?(d) What ultimately controls the direction of net conversion of a substratecycle such as this in the cell?

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Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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Please help fill out the metabolic Pathway table of Gluconeogenesis and Tricarboxylic by listing its enzymes and functions
Under standard conditions, is the oxidation of free FADH2 by ubiquinone sufficiently exergonic to drive the synthesis of ATP? (F = 96.5 kJ/V • mol) ubiquinone + 2H++ 2e¯ → ubiquinol E' = 0.045 V FAD + 2H++ 2e → FADH2 = E' -0.219 V ○ no, as oxidation of FADH2 by ubiquinone generates 33.6 kJ/mol ○ no, as oxidation of FADH2 by ubiquinone generates 50.9 kJ/mol ○ no, as oxidation of FADH2 by ubiquinone generates -25.5 kJ/mol ○ yes, as oxidation of FADH2 by ubiquinone generates -33.6 kJ/mol ○ yes, as oxidation of FADH2 by ubiquinone generates -50.9 kJ/mol
Mention two biological advantages to an organism that stores its carbohydrate reserves as starch or glycogen rather than as an equivalent amount of free glucose. What role does the protein, glycogenin play in glycogen synthesis? Name the reactants and products of the first two steps of the gluconeogenesis pathway if pyruvate is used as the starting material (structures not needed). Explain why people with a deficiency of the enzyme glucose 6-phosphate dehydrogenase (G6PDH) suffer from hemolytic anemia What is meant by reciprocal regulation? Name one compound that reciprocally regulates glycolysis and gluconeogenesis pathways. Which enzymes are regulated by this compound? What reactions are catalyzed by these enzymes?
For an enzyme catalyzed reaction of the form: S + E → P + E, the rate of product formation, [P], is given by: d[P]/dt = k2[E}total [S] /(Km + [S]) = For the enzymatically catalyzed hydrolysis of ATP at 25 °C and pH 7.0, the Michaelis Menten constant, Km was found to be equal to 16.8 μmol L 1 and the value of k2[E]total was found to be 0.220 μmol L-¹s¹. Find the initial rate at an initial ATP concentration of 30.0 μmol L-1
Although both hexokinase and phosphofructokinase catalyze irreversible steps in glycolysis and the hexokinase-catalyzed step is first, phosphofructokinase is nonetheless the pacemaker of glycolysis. What does this information tell you about the fate of the glucose 6-phosphate formed by hexokinase? Glucose 6-phosphate must be unstable and release its phosphoryl group over time. Glucose 6-phosphate must be utilized by other metabolic pathways. Glucose 6-phosphate must allosterically inhibit phosphofructokinase, but not hexokinase. Glucose 6-phosphate must be wasted when it is produced in excess.
What if the phosphate group for the glycolysis reaction with enzyme glyceraldehyde 3-phosphate dehydrogenase was from ATP instead of Pi? What would the complete, balanced, net rxn of glycoslysisequation be and how does this impact the overall glycolysis rxn?
For the following enzymes (3-6) predict how the conditions will most likely affect the enzymes activity with one of the following and provide a 1 sentence explanation: a. increase activity b. decrease activity c. not likely to alter activity 3) alpha-ketoglutarate dehydrogenase complex binding to AMP when [AMP] is high. 4) phosphohexose isomerase binding NADH when [NADH] is high 5) phosphofructose-1 binding NAD+ when [NAD+] is high 6) pyruvate dehydrogenase complex binding to ATP when [ATP] is high
In different organisms sucrose can be cleaved either by hydrolysis or by phosphorolysis. Calculate the ATP yield per mole of sucrose metabolized by anaerobic glycolysis starting with (a) hydrolytic cleavage and (b) phosphorolytic cleavage.
During glycolysis, the enzyme glyceraldehyde phosphate dehydrogenase (GAPDH) catalyzes the oxidation and phosphorylation of glyceraldehyde 3-phosphate, forming 1,3-bisphosphoglycerate. This reaction, shown below, has a ΔG that is close to zero under cellular conditions. During gluconeogenesis, GAPDH catalyzes the reverse reaction, in which 1,3-bisphosphoglycerate is reduced and dephosphorylated. Given this information, which of the following conditions are most likely to directly alter the relative rates of the forward and reverse reactions? (select two answers) changes in the relative concentrations of glyceraldehyde 3-phosphate and 1,3-bisphosphoglycerate changes in the relative concentrations of NAD+ and NADH decreased cellular concentration of pyruvate increased cellular concentration of glucose regulation of GAPDH activity
The oxidation of Gly-3-P to 1,3-bisphosphoglycerate proceeds with an unfavorable AG which equals 6.3 KJ/mol, yet the flow through this point in the glycolytic pathway proceeds smoothly. Why???
Draw the products of the reaction of xylulose-5-phosphate and erythrose-4-phosphate catalyzed by transketolase in the pentose phosphate pathway. Provide the structure in the protonation state found in physiological conditions. H H H OH FO HO-H H-OH H OPO3²- Q transketolase Draw glyceraldehyde-3- phosphate H H- H H H O OH OH OPO3²- Draw fructose-6- phosphate Q I I
Consider a 24:1 △cis-9 fatty acid in the mitochondrion. For each fatty acid given, determine the following. 1. Gross ATP from b-oxidation cycles 2. Gross ATP from acetyl CoA produced 3. Gross ATP from conversion of propionyl CoA (if applicable) 4. Total number of ATP deducted 5. Total net ATP

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