3. Based on the tracing of current below measured through a nanopore made from a-hemolysin channel fused with cyclodextrin during translocation of free nucleotides in the paper of Clarke et al (2009) (lecture notes "DNA Sequencing"), roughly estimate the time (in hours), which would be required to sequence a single-stranded DNA molecule with a length of 100 million NTS assuming that a. the a-hemolysin + cyclodextrin protein is supplemented with exonuclease, which cleaves off nucleotides right at the pore entrance, and b. the exonuclease cleavage rate is similar to the nucleotide translocation rate through the pore (there is always a nucleotide inside the channel). a 60 Residual pore current (pA) 50 40 30 20 10 TT 30.4 T AT AA 30.6 CGC TCAC CCCTC TGCA T CT C 31.0 30.8 Time (s) 31.2

Human Anatomy & Physiology (11th Edition)
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Author:Elaine N. Marieb, Katja N. Hoehn
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Chapter1: The Human Body: An Orientation
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3. Based on the tracing of current below measured through a nanopore made from a-hemolysin
channel fused with cyclodextrin during translocation of free nucleotides in the paper of Clarke
et al (2009) (lecture notes "DNA Sequencing"), roughly estimate the time (in hours), which
would be required to sequence a single-stranded DNA molecule with a length of 100 million
NTs assuming that
a. the a-hemolysin + cyclodextrin protein is supplemented with exonuclease, which
cleaves off nucleotides right at the pore entrance, and
b. the exonuclease cleavage rate is similar to the nucleotide translocation rate through the
pore (there is always a nucleotide inside the channel).
60
a
Residual pore
current (PA)
50
40
30
20
10
TT
30.4
T AT AA
30.6
CGC TCAC CCCTC TGCA T
30.8
Time (s)
31.0
CTC
31.2
Transcribed Image Text:3. Based on the tracing of current below measured through a nanopore made from a-hemolysin channel fused with cyclodextrin during translocation of free nucleotides in the paper of Clarke et al (2009) (lecture notes "DNA Sequencing"), roughly estimate the time (in hours), which would be required to sequence a single-stranded DNA molecule with a length of 100 million NTs assuming that a. the a-hemolysin + cyclodextrin protein is supplemented with exonuclease, which cleaves off nucleotides right at the pore entrance, and b. the exonuclease cleavage rate is similar to the nucleotide translocation rate through the pore (there is always a nucleotide inside the channel). 60 a Residual pore current (PA) 50 40 30 20 10 TT 30.4 T AT AA 30.6 CGC TCAC CCCTC TGCA T 30.8 Time (s) 31.0 CTC 31.2
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