To review:
The differences between the properties of water (H2O), ammonia (NH3), and methane (CH4), based on the hydrogen bonding in their structure. The heat of fusion for water, ammonia, and methane is given as 6.01, 5.66, and 0.94 kJ/mol, respectively. Also, determine increase or decrease in the density of ammonia in the form of ice (if generated), as compared to liquid ammonia.
Introduction:
The molecular mass of water, ammonia, and methane is almost equal, and all of them show tetrahedral geometry. The heat of fusion is the highest in water, decreases in ammonia, and is the least in methane. Water has a highly polar structure. The three molecules (water, ammonia, and methane) are sp3 hybridized and are tetrahedral instructure. However, there is a difference in the number of lone pairs in them, leading to an overall different geometry and different physical properties.
Explanation of Solution
Water has two hydrogen atom, shich are covalently bonded to one oxygen atom. The oxygen is sp3 hybridized. Due to the presence of twolone pairs, this molecule has a bent geometry. As a whole, a water molecule is polar and acts as a dipole. The electronegativity of oxygen is more than that of hydrogen, and thus, it bears a partial negative charge, whereas two hydrogen atoms beara partial positive charge. The hydrogen atoms in asingle water molecule are electrondeficient, and thus, tend to be attracted toward the oxygen atom of another water molecule. Thus, hydrogen bonds (intermolecular)act as bridges between neighboringwater molecules. One water molecule can form hydrogen bonds with four otherwater molecules.
The structures of thethreemolecules can be represented as
An ammoniamoleculehasonelone pair (unshared electron) ofa nitrogenatom and has a trigonal pyramidal structure. There is limited hydrogen bonding (intramolecular)in case of ammoniaasnitrogen has onlyone lone pair available.
Methane exists in a gaseous statethat has one carbon atom bonded with four hydrogen atoms. The central atom, that is, carbon, forms covalent bonds with four hydrogen atoms by the sharing of electrons. This sharing completes the outer shell of both the carbon and the hydrogen atoms. The four hydrogen atoms give an overall tetrahedral shape to the molecule. No hydrogen bonds are involved in methane as there is no highly electronegative element to form a bond with hydrogen.
A hydrogen bondhaslower bond strength thana covalent bond, thus, it is weaker. However, when a largenumber of intermolecular bonds are formed, they are quite strong. This explains the differences in the heat of fusion (energy required to melt ice by breaking bonds) for water, ammonia, and methane. Due to a highernumber of hydrogen bonds, physical propertie, such asmelting point, boiling point, heat capacity, the heat of fusion, surface tensio, nnd heat of vaporization, have higher values in wate, rs compared to that of methane and ammonia.
In ammonia, the density of the solid state (ice), if generated, is expected to be more than that of liquid ammonia. This is because the hydrogen bonding between different ammonia molecules will not be as extensive as in case of water insolid state (open cage structure in ice). This is due to limited hydrogen bonding of nitrogen. Thus, as a general case, the solid form of ammonia will beless denser than its liquid form.
Thus, it can be concluded that water, ammonia, and methane molecules are tetrahedral in structure, but differ in their overall geometry and physical properties due to thenumber of lone pairs in them and hydrogen bonding. The heat of fusion is the highest for water moleculesbecauseofstrong intermolecular hydrogen bonds. Also, ammonia ice will not form a cage-like structure (as in water), and thus, its density is expected to be lesser than that of liquid ammonia.
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Chapter 3 Solutions
Biochemistry, The Molecular Basis of Life, 6th Edition
- Draw out the following peptide H-R-K-E-D at physiological pH (~7.4). Make sure toreference table 3.1 for pKa values.arrow_forwardThe table provides the standard reduction potential, E', for relevant half-cell reactions. Half-reaction E'° (V) Oxaloacetate² + 2H+ + 2e malate²- -0.166 Pyruvate + 2H+ + 2e → lactate -0.185 Acetaldehyde + 2H+ + 2e¯ →→→ ethanol -0.197 NAD+ + H+ + 2e--> NADH -0.320 NADP+ + H+ + 2e →→ NADPH Acetoacetate + 2H+ + 2e¯ - -0.324 B-hydroxybutyrate -0.346 Which of the reactions listed would proceed in the direction shown, under standard conditions, in the presence of the appropriate enzymes? Malate + NAD+ oxaloacetate + NADH + H+ Malate + pyruvate oxaloacetate + lactate Pyruvate + NADH + H+ lactate + NAD+ Pyruvate + p-hydroxybutyrate lactate + acetoacetate Acetaldehyde + succinate ethanol + fumerate Acetoacetate + NADH + H+ → B-hydroxybutyrate + NAD+arrow_forwardArrange the four structures in order from most reduced to most oxidized. Most reduced R-CH2-CH3 R-CH2-CH₂-OH R-CH,-CHO R-CH₂-COO Most oxidizedarrow_forward
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- The standard free energy, AGO, of hydrolysis of inorganic polyphosphate, polyP, is about −20 kJ/mol for each P; released. In a cell, it takes about 50 kJ/mol of energy to synthesize ATP from ADP and Pi. ○ P O Inorganic polyphosphate (polyP) Is it feasible for a cell to use polyP to synthesize ATP from ADP? Why or why not? No. The reaction is unidirectional and always proceeds in the direction of polyP synthesis from ATP. Yes. If [ADP] and [polyP] are kept high, and [ATP] is kept low, the actual free-energy change would be negative. No. The synthesis of ATP from ADP and P; has a large positive G'o compared to polyP hydrolysis. Yes. The hydrolysis of polyP has a sufficiently negative AG to overcome the positive AGO of ATP synthesis. Correct Answerarrow_forwardIn the glycolytic pathway, a six-carbon sugar (fructose 1,6-bisphosphate) is cleaved to form two three-carbon sugars, which undergo further metabolism. In this pathway, an isomerization of glucose 6-phosphate to fructose 6-phosphate (as shown in the diagram) occurs two steps before the cleavage reaction. The intervening step is phosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate. H H | H-C-OH H-C-OH C=0 HO-C-H HO-C-H phosphohexose isomerase H-C-OH H-C-OH H-C-OH H-C-OH CH₂OPO CH₂OPO Glucose 6-phosphate Fructose 6-phosphate What does the isomerization step accomplish from a chemical perspective? Isomerization alters the molecular formula of the compound, allowing for subsequent phosphorylation. Isomerization moves the carbonyl group, setting up a cleavage between the central carbons. Isomerization causes the gain of electrons, allowing for the eventual release of NADH. Isomerization reactions cause the direct production of energy in the form of ATP.arrow_forwardFrom data in the table, calculate the AG value for the reactions. Reaction AG' (kJ/mol) Phosphocreatine + H₂O →>> creatine + P -43.0 ADP + Pi → ATP + H₂O +30.5 Fructose +P → fructose 6-phosphate + H₂O +15.9 Phosphocreatine + ADP creatine + ATP AG'O ATP + fructose → ADP + fructose 6-phosphate AG'° kJ/mol kJ/molarrow_forward
- Macmillan Learning The phosphorylation of glucose to glucose 6-phosphate is the initial step in the catabolism of glucose. The direct phosphorylation of glucose by P, is described by the equation Glucose + P ← glucose 6-phosphate + H₂O AG = 13.8 kJ/mol Coupling ATP hydrolysis to glucose phosphorylation makes thermodynamic sense, but consider how the coupling might take place. Given that coupling requires a common intermediate, one conceivable mechanism is to use ATP hydrolysis to raise the intracellular concentration of Pi. The increase in P; concentration would drive the unfavorable phosphorylation of glucose by Pi- Is increasing the P; concentration a reasonable way to couple ATP hydrolysis and glucose phosphorylation? No. The phosphate salts of divalent cations would be present in excess and precipitate out. Yes. Increasing the concentration of P; would decrease K'eq and shift equilibrium to the right. Yes. The extra ATP hydrolysis would provide enough free energy to drive the…arrow_forwardThe phosphorylation of glucose to glucose 6-phosphate is the initial step in the catabolism of glucose. The direct phosphorylation of glucose by P, is described by the equation Glucose + P → glucose 6-phosphate + H₂O AG' = 13.8 kJ/mol In principle, at least, one way to increase the concentration of glucose 6-phosphate (G6P) is to drive the equilibrium reaction to the right by increasing the intracellular concentrations of glucose and Pj. The maximum solubility of glucose is less than 1 M, and the normal physiological concentration of G6P is 250 μM. Assume a fixed concentration of P, at 4.8 mM. The calculated value of K'cq is 4.74 × 10-³ M-¹. Calculate the intracellular concentration of glucose when the equilibrium concentration of glucose 6-phosphate is 250 μM, the normal physiological concentration. [glucose] = 10.99 Correct Answer Would increasing the concentration of glucose be a physiologically reasonable way to increase the concentration of G6P? No. Because the concentration of P,…arrow_forwardCalculate the equilibrium constant for the phosphorylation of glucose to glucose 6-phosphate at 37.0 °C. K'eq = M-' In the rat hepatocyte, the physiological concentrations of glucose and P, are maintained at approximately 4.8 mM. What is the equilibrium concentration of glucose 6-phosphate (G6P) obtained by the direct phosphorylation of glucose by P.? [G6P] = Does this reaction represent a reasonable metabolic step for the catabolism of glucose? Why or why not? Yes, because the value of AG" is positive. No, because the K'eq is too large for the reaction to proceed in the forward direction. Yes, because AG is negative at the calculated value of K'eq No, because [G6P] is likely to be higher than the calculated value. Marrow_forward
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