Concept explainers
Interpretation:
Concept introduction:
Many amino acids are linked together through amide bonds to form a biologically large molecule known to be proteins.
Amino functional group is
Secondary structure of protein is the repeating structural patterns (
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Fundamentals of General, Organic, and Biological Chemistry (8th Edition)
- The pi-helix is a rare secondary structural element in proteins that resembles an alpha helix but has slightly different properties. Notably, hydrogen bonds within a pi-helix display a repeating pattern in which the backbone C=O of residue i hydrogen bonds to the backbone HN of residue i+5. Based on this information, which of the following are true? Select all that apply. O The hydrogen bonding distance between C=O and NH groups remains unchanged between pi-helices and alpha-helices The torsion angles of amino acids found in pi-helices are the same as those found in alpha-helices Pi-helices have a smaller rise per residue compared to alpha- helices Pi-helices have fewer residues per turn compared to alpha-helices Pi-helices have more residues per tůrn compared to alpha-helices Pi-helices are left handedarrow_forwardDraw the structural formula of the oligopeptide if the amino acids are arginine, glutamine, glycine, methionine and glutamic acid considering the first amino acid is the N-terminusarrow_forwardDraw out the structural formula of the oligopeptide, with the first amino acid as the N-terminusarrow_forward
- Give the name of the base, the ribonucleoside or deoxyribonucleoside, and the ribonucleoside triphosphate for A, G, C, T, and U.arrow_forwardGive the effect of the following changes in the protein structure of hemoglobin Replacement of analanine located at the middle of helix B with prolinearrow_forwardThe structure of an alpha helix orients the oxygens of the carbonyl group of the peptide bond towards the C-terminal end of the helix while the hydrogens of the NH groups orient toward the N-terminal end, thus imparting a dipole along the length of the helix. As a result, which kinds of amino acids would favor the C-terminal end, and which would favor the N-terminal end? negatively charged, positively charged positively charged, negatively charged negatively charged, hydrophobic positively charged, hydrophobic hydrophobic, negatively charged hydrophobic, positively chargedarrow_forward
- Helices can be described by the notation nm,where n is the number of residues per helical turn and m is the number of atoms, including H, in the ring that is closed by the hydrogen bond. Would a 310 helix be more or less steep than an α helix? why?arrow_forwardDraw the strucures of Adenosine Triphosphate (ATP) and Cytidine Triphosphate and Show how they combine to form the polynuleotide (i.e. only the end product). Show at any one of these structures where the glycosidic bond occursarrow_forwardDraw the RNA dinucleotide formed if deoxyguanidine 5'phosphate and deoxythymidine 5'phosphate monophosphates undergo a condensation reaction. Label the 5' and 3' ends of your structure. 0-P-O-CH2 NH2 --P-O-CH2 Identify the phosphodiester bond. \H KH H. H H H H ОН H ОН H Garrow_forward
- An π helix can be described as a 4.4, helix. Explain 16 what this designation means. Given the pitch of the helix is 5.2 angstroms, how long in(nm) is the pi helix that has six residues.arrow_forwardWhy do think nucleotides are also sometimes referred to as “bases” or “nucleotide bases”? What is the difference between a nucleotide and a nucleoside? Explain by giving an example, using structures. What kind of bond links a base to some sugar? Is the sugar an alpha or beta anomer? In what position(s) of the sugar does this occur? In what position(s) of the base does this occur? Instead of the term “Formation of a nucleoside”, what could the name of the reaction be? What functional group is being formed? Define the primary structure of DNA/RNA. Compare and contrast to the primary structure of proteins.arrow_forwardGiven that an α helix has 3.6 residues per turn and the rise along the α helix axis is 5.4 Å, approximately how many amino acids would you find in a single contiguous α helix that is 210 Å long?arrow_forward
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