(ii) Is the sequence below in FASTA format? Justify your answer. >gi 129295|sp|P01013 | OVAX_CHICK GENE X PROTEIN (OVALBUMIN-RELATED) QIKDLLVSSSTDLDTTLVLVNAIYFKGMWKTAFNAEDTREMPFHVTKQESKPVQMMCMNNSFNVATLPAE KMKILELPFASGDLSMLVLLPDEVSDLERIEKTINFEKLTEWTNPNTMEKRRVKVYLPQMKIEEKYNLTS VLMALGMTDLFIPSANLTGISSAESLKISQAVHGAFMELSEDGIEMAGSTGVIEDIKHSPESEQFRADHP FLFLIKHNPTNTIVYFGRYWSP (iii) Based on Figure 4, state which software could assist in generating these results? Chymotrypsin elastase trypsin plasminogen factorXI transmembrane consensus Chymotrypsin elastase trypsin plasminogen actorXI transmembrane consensus (iv) 1 FHFCGGSLISEDWVVTAA CGVRT---SDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFS--ILTVNNDITELKLATP 1 YHTCGGSLIANSWVLTAAHCISSSR----TYRVGLGRENLYVAESGSLAVSVSKIVVHKDWNSNQIKSGNDIALLKLANP 1 YEFCGGSLINEQWVVSAGHCYKSR------IQVRLGEHNIEVLEGNEQFINAAKIIRHPOYD--RKTLNNDIMLIKLSSR 1 MHFCGGTLISPENVLTAA CLEKSPRPS-SYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRK-DIALLKLSSP 1 RELCGGSIIGNOWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVOEIIIHDOYK--MAESGYDIALLKLETT 1 VEVCGGSIITPEWIVTAA CVEKPLNNPWHWTAFAGILROSFMFYGAG-YOVERVISHPNYD--SKTKNNDIALMKLOKP v ki HCGGs11 WvvtAaHC V CLP V CitGWG G 74 ARFSQTVSAVCLPSADDDFPAGTLEATTONGKTKYNANKTPDKEQOAALPLLSNAECKKS--WGRRITDVMICAG-ASG- 77 VSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLOTNG-AVPDVLOOGRELVVDYATCSSSAWWGSSVKTSMICAG-GDGV 73 AVINARVSTISLPTAPP--ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 72 AVITDKVIPACLPSPNYVVADRTECFITONG--ETOGTFGAGLEKEÄOLPVIENKVENRYEFLNGRVOSTELCAGHLAGG 78 VNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRD-KIONTLOKAKIPLVTNEECOKRYR-GHKITHKMICAGYREGG 78 LTFNDLVKPVCLPNPGMMLOPEQLEWISGWGATEEKG-KTSEVINARKULLIETORCNSRYVYDNLITPAMICAGFLOGN Lq a 1 11 9 Figure 4 What can you interpret from the results shown in Figure 4? Y с DI LIKL i micaG G
(ii) Is the sequence below in FASTA format? Justify your answer. >gi 129295|sp|P01013 | OVAX_CHICK GENE X PROTEIN (OVALBUMIN-RELATED) QIKDLLVSSSTDLDTTLVLVNAIYFKGMWKTAFNAEDTREMPFHVTKQESKPVQMMCMNNSFNVATLPAE KMKILELPFASGDLSMLVLLPDEVSDLERIEKTINFEKLTEWTNPNTMEKRRVKVYLPQMKIEEKYNLTS VLMALGMTDLFIPSANLTGISSAESLKISQAVHGAFMELSEDGIEMAGSTGVIEDIKHSPESEQFRADHP FLFLIKHNPTNTIVYFGRYWSP (iii) Based on Figure 4, state which software could assist in generating these results? Chymotrypsin elastase trypsin plasminogen factorXI transmembrane consensus Chymotrypsin elastase trypsin plasminogen actorXI transmembrane consensus (iv) 1 FHFCGGSLISEDWVVTAA CGVRT---SDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFS--ILTVNNDITELKLATP 1 YHTCGGSLIANSWVLTAAHCISSSR----TYRVGLGRENLYVAESGSLAVSVSKIVVHKDWNSNQIKSGNDIALLKLANP 1 YEFCGGSLINEQWVVSAGHCYKSR------IQVRLGEHNIEVLEGNEQFINAAKIIRHPOYD--RKTLNNDIMLIKLSSR 1 MHFCGGTLISPENVLTAA CLEKSPRPS-SYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRK-DIALLKLSSP 1 RELCGGSIIGNOWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVOEIIIHDOYK--MAESGYDIALLKLETT 1 VEVCGGSIITPEWIVTAA CVEKPLNNPWHWTAFAGILROSFMFYGAG-YOVERVISHPNYD--SKTKNNDIALMKLOKP v ki HCGGs11 WvvtAaHC V CLP V CitGWG G 74 ARFSQTVSAVCLPSADDDFPAGTLEATTONGKTKYNANKTPDKEQOAALPLLSNAECKKS--WGRRITDVMICAG-ASG- 77 VSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLOTNG-AVPDVLOOGRELVVDYATCSSSAWWGSSVKTSMICAG-GDGV 73 AVINARVSTISLPTAPP--ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG 72 AVITDKVIPACLPSPNYVVADRTECFITONG--ETOGTFGAGLEKEÄOLPVIENKVENRYEFLNGRVOSTELCAGHLAGG 78 VNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRD-KIONTLOKAKIPLVTNEECOKRYR-GHKITHKMICAGYREGG 78 LTFNDLVKPVCLPNPGMMLOPEQLEWISGWGATEEKG-KTSEVINARKULLIETORCNSRYVYDNLITPAMICAGFLOGN Lq a 1 11 9 Figure 4 What can you interpret from the results shown in Figure 4? Y с DI LIKL i micaG G
Human Anatomy & Physiology (11th Edition)
11th Edition
ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
Publisher:Elaine N. Marieb, Katja N. Hoehn
Chapter1: The Human Body: An Orientation
Section: Chapter Questions
Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
Related questions
Question
Transcribed Image Text:(ii) Is the sequence below in FASTA format? Justify your answer.
>gi 129295|sp|P01013 | OVAX_CHICK GENE X PROTEIN (OVALBUMIN-RELATED)
QIKDLLVSSSTDLDTTLVLVNAIYFKGMWKTAFNAEDTREMPFHVTKQESKPVQMMCMNNSFNVATLPAE
KMKILELPFASGDLSMLVLLPDEVSDLERIEKTINFEKLTEWTNPNTMEKRRVKVYLPQMKIEEKYNLTS
VLMALGMTDLFIPSANLTGISSAESLKISQAVHGAFMELSEDGIEMAGSTGVIEDIKHSPESEQFRADHP
FLFLIKHNPTNTIVYFGRYWSP
Chymotrypsin
elastase
trypsin
plasminogen
factorXI
transmembrane
consensus
Chymotrypsin
elastase
trypsin
plasminogen
factorXI
transmembrane
consensus
(iv)
Based on Figure 4, state which software could assist in generating these results?
1 FHFCGGSLISEDWVVTAA CGVRT-----SDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFS--ILTVNNDITELKLATP
1 YHTCGGSLIANSWVLTAAHCISSSR----TYRVGLGRHNLYVAESGSLAVSVSKIVVHKDWNSNQIKSGNDIALLKLANP
1 YHFCGGSLINEOWWVSAGHCYKSR------IQVRLGEHNIEVLEGNEQFINAAKIIRHPOYD--RKTLNNDIMLIKLSSR
1 MHFCGGTLISPEWVLTAAHCLEKSPRPS-SYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRK-----
1
RHLCGGSIIGNOWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVOEIIIHDOYK--MAESGYDIALLKLETT
1 VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILROSFMFYGAG-YOVEKVISHPNYD--SKTKNNDIALMKLOKP
HCGGS1I WvvtAaHC
V CLP
VG
C itGWG
v ki
9
74 ARFSQTVSAVCLPSADDDFPAGTLEATTGWGKTKYNANKTPDKEQQAALPLESNAECKKS--WGRRITDVMICAG-ASG-
77 VSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLOTNG-AVPDVLQOGRLLVVDYATCSSSAWWGSSVKTSMICAG-GDGV
73 AVINARVSTISLPTAPP--ATGTKCLISGWGNTASSGADYPDELOCLDAPVLSQAKCEAS--YPGKITSNMFCVGFLEGG
72 AVITDKVIPACLPSPNYVVADRTECFITGWG--ETOGTFGAGLEKEÄOLPVIENKVCNRYEFLNGRVOSTELCAGHLAGG
78 VNYTDSQRPICLPSKGDRNVIYTDCWVTCWGYRKLRD-KIONTLOKAKIPLVTNEECOKRYR-GHKITHKMICAGYREGG
78 LTFNDLVKPVCLPNPGMMLOPEQLCWISGWGATEEKG-KTSEVINAAKVLLIETORCNSRYVYDNLITPAMICAGFLOGN
Lq a 1 11
Figure 4
What can you interpret from the results shown in Figure 4?
Y
с
DIALLKLSSP
DI LIKL
i micaG G
Expert Solution
Step 1
Sequence alignment is a procedure in bioinformatics where DNA, RNA, and protein sequences are arranged using some particular tools to identify the regions of similarity among them. Similarity searching is the primary step for so many bioinformatics experiments.
FASTA (fasta) is biological computational format in which the sequences are generated prior to import that into various tools. The output are also stored in this format. This format has a specific pattern that it starts with > followed by an unique seq. id.
Step by step
Solved in 2 steps
Knowledge Booster
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, biology and related others by exploring similar questions and additional content below.Recommended textbooks for you
Human Anatomy & Physiology (11th Edition)
Biology
ISBN:
9780134580999
Author:
Elaine N. Marieb, Katja N. Hoehn
Publisher:
PEARSON
Biology 2e
Biology
ISBN:
9781947172517
Author:
Matthew Douglas, Jung Choi, Mary Ann Clark
Publisher:
OpenStax
Anatomy & Physiology
Biology
ISBN:
9781259398629
Author:
McKinley, Michael P., O'loughlin, Valerie Dean, Bidle, Theresa Stouter
Publisher:
Mcgraw Hill Education,
Human Anatomy & Physiology (11th Edition)
Biology
ISBN:
9780134580999
Author:
Elaine N. Marieb, Katja N. Hoehn
Publisher:
PEARSON
Biology 2e
Biology
ISBN:
9781947172517
Author:
Matthew Douglas, Jung Choi, Mary Ann Clark
Publisher:
OpenStax
Anatomy & Physiology
Biology
ISBN:
9781259398629
Author:
McKinley, Michael P., O'loughlin, Valerie Dean, Bidle, Theresa Stouter
Publisher:
Mcgraw Hill Education,
Molecular Biology of the Cell (Sixth Edition)
Biology
ISBN:
9780815344322
Author:
Bruce Alberts, Alexander D. Johnson, Julian Lewis, David Morgan, Martin Raff, Keith Roberts, Peter Walter
Publisher:
W. W. Norton & Company
Laboratory Manual For Human Anatomy & Physiology
Biology
ISBN:
9781260159363
Author:
Martin, Terry R., Prentice-craver, Cynthia
Publisher:
McGraw-Hill Publishing Co.
Inquiry Into Life (16th Edition)
Biology
ISBN:
9781260231700
Author:
Sylvia S. Mader, Michael Windelspecht
Publisher:
McGraw Hill Education