Genetics: From Genes to Genomes, 5th edition
Genetics: From Genes to Genomes, 5th edition
5th Edition
ISBN: 9780073525310
Author: Leland H. Hartwell, Michael L. Goldberg, Janice A. Fischer, Leroy Hood, Charles F. Aquadro
Publisher: McGraw-Hill Education
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Chapter 14, Problem 7P

Suppose you are characterizing the DNA of a diploid plant species that had never been analyzed previously.

You purify all the DNA that can be isolated from a seedling, and subject this DNA to high-throughput sequencing involving millions of “reads” of random DNA fragments.

a. If you obtained on average 100 reads of a given single-copy nuclear DNA sequence, about how many reads would you obtain for mtDNA? For cpDNA? (Assume each mitochondrion has 10 ge- nome copies and that each choloroplast has 20 ge- nome copies. Assume also that the average cell of this plant species has 1000 mitochondria and 50 chloroplasts.)
b. Beyond the number of reads, what other criteria would allow you to conclude whether a particular read was of nuclear DNA, mtDNA, or cpDNA?
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