STEP 1 YFP Trarsfect into ouilts STEP 2 Epitope-tagged protain (ancoded by eDNA) STEP 3 Lyse calls YFP Competitive eluion with peptide encoding the epitope YFP Gel elactrophoresis A YFP A B STEP 5 STEP 6 Afinty-based purification uang immobilized artibody against the epitape STEP 4 Excise bands end analyze by mass spactrometry STEP 7

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Are the bands indicated in Step 6 (SDS-PAGE) likely visualized by western blot or by a general protein stain (such as Coomassie or silver)? 

**Title: Epitope-Tagged Protein Interaction Study Workflow**

**Introduction:**

The figure illustrates a multi-step process used to study protein interactions using an epitope-tagged protein expressed in cells. Below is a detailed description of each step, accompanied by explanations of the graphical elements.

**Step-by-Step Workflow:**

**Step 1: Epitope-Tagged Protein (Encoded by cDNA)**
- **Description:** The process begins with the epitope-tagged protein, which is depicted by a rectangular yellow icon labeled "YFP" (Yellow Fluorescent Protein).
- **Graphical Element:** The yellow rectangle with "YFP" inside.

**Step 2: Transfection into Cells**
- **Description:** The cDNA encoding the epitope-tagged protein is transfected into cells, facilitating the expression of the tagged protein within them.
- **Graphical Element:** A stylized cell showing various molecules including the YFP-tagged protein, indicated as a yellow point within the cell.

**Step 3: Lyse Cells**
- **Description:** The cells are lysed to release their contents, including the YFP-tagged protein and associated complexes.
- **Graphical Element:** An arrow from the cell to the next step, indicating the cell lysis process.

**Step 4: Affinity-Based Purification Using Immobilized Antibody Against the Epitope**
- **Description:** The YFP-tagged protein and its associated complexes are captured using antibodies immobilized on a solid support targeted against the epitope.
- **Graphical Element:** A column representation with an immobilized antibody capturing the YFP-tagged protein and its interacting partners (colored shapes A, B, C, D).

**Step 5: Competitive Elution with Peptide Encoding the Epitope**
- **Description:** The YFP-tagged protein along with its associated complexes (A, B, C, D) are eluted using a competing peptide encoding the same epitope.
- **Graphical Element:** An arrow representing the competitive elution process, showing the YFP and the associated proteins being released.

**Step 6: Gel Electrophoresis**
- **Description:** The eluted components are separated by gel electrophoresis, allowing for the analysis of different proteins based on their size.
- **Graphical Element:** A gel with distinct bands corresponding to the YFP-tagged protein and associated proteins (A, B, C,
Transcribed Image Text:**Title: Epitope-Tagged Protein Interaction Study Workflow** **Introduction:** The figure illustrates a multi-step process used to study protein interactions using an epitope-tagged protein expressed in cells. Below is a detailed description of each step, accompanied by explanations of the graphical elements. **Step-by-Step Workflow:** **Step 1: Epitope-Tagged Protein (Encoded by cDNA)** - **Description:** The process begins with the epitope-tagged protein, which is depicted by a rectangular yellow icon labeled "YFP" (Yellow Fluorescent Protein). - **Graphical Element:** The yellow rectangle with "YFP" inside. **Step 2: Transfection into Cells** - **Description:** The cDNA encoding the epitope-tagged protein is transfected into cells, facilitating the expression of the tagged protein within them. - **Graphical Element:** A stylized cell showing various molecules including the YFP-tagged protein, indicated as a yellow point within the cell. **Step 3: Lyse Cells** - **Description:** The cells are lysed to release their contents, including the YFP-tagged protein and associated complexes. - **Graphical Element:** An arrow from the cell to the next step, indicating the cell lysis process. **Step 4: Affinity-Based Purification Using Immobilized Antibody Against the Epitope** - **Description:** The YFP-tagged protein and its associated complexes are captured using antibodies immobilized on a solid support targeted against the epitope. - **Graphical Element:** A column representation with an immobilized antibody capturing the YFP-tagged protein and its interacting partners (colored shapes A, B, C, D). **Step 5: Competitive Elution with Peptide Encoding the Epitope** - **Description:** The YFP-tagged protein along with its associated complexes (A, B, C, D) are eluted using a competing peptide encoding the same epitope. - **Graphical Element:** An arrow representing the competitive elution process, showing the YFP and the associated proteins being released. **Step 6: Gel Electrophoresis** - **Description:** The eluted components are separated by gel electrophoresis, allowing for the analysis of different proteins based on their size. - **Graphical Element:** A gel with distinct bands corresponding to the YFP-tagged protein and associated proteins (A, B, C,
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