Please note: this is the second time I'm posting this question because the first one I received a wrong answer. I would like a new workable code that solves the problem. Please use the tree defined in the code and write a function that solves the problem. Please don't copy the old code on Bartleby and send it to me. It doesn't work or solve the problem. I will upvote if you write a new workable code that solves the problem. Please note: the goal is not to construct a tree but to calculate the posterior probabilities Use the tree, observed states at the leaves, branch lengths and the JC69, calculate the posterior probability of [A,G,C,T] at node 15.AсGC13579с2(12)(11)C4(10)(13)(14)с615A8 # Use this character state vector indicating# the nucleotide at leaf nodes 1-8sitel=["A","c","c","c","G","C","C","A"]# Use this tree structuretree4 {"branch": 1.1}],15: ['N', { "node": 14, "branch": 0.02}, {"node" : 8,14: ['N', { "node": 13, "branch": 0.11}, {"node": 7, "branch": 1.2}],13: ['N',{"node": 12, "branch": 0.12}, {"node": 6, "branch": 0.8}],12: ['N',{"node": 11, "branch": 0.64}, {"node": 9, "branch": 0.11}],11: ['N', { "node": 3, "branch": 0.26}, {"node": 10, "branch": 0.24}],10: ['N', { "node": 4, "branch": 0.02}, {"node": 5, "branch": 0.08}],9: ['N',{"node": 1, "branch": 0.4}, {"node": 2, "branch": 0.6}]}for i in range(1, 9):tree4[i] = ['L']#JC69 model to generate Q matrixdef JC69():np. full ((4,4), 0.25)np. fill_diagonal (0,-.75)QQ/0.75return Q#Initialize rate matrixJC69 ( )# Answer

Markov Chain Monte Carlo (MCMC) is a class of algorithms used to sample from a probability…

Answered: Please note: this is the second time…

Database System Concepts

7th Edition

ISBN:9780078022159

Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan

Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan

Chapter1: Introduction

Section: Chapter Questions

Problem 1PE

See similar textbooks

Related questions

Question

Please note: this is the second time I'm posting this question because the first one I received a wrong answer. I would like a new workable code that solves the problem. Please use the tree defined in the code and write a function that solves the problem. Please don't copy the old code on Bartleby and send it to me. It doesn't work or solve the problem. I will upvote if you write a new workable code that solves the problem.

Please note: the goal is not to construct a tree but to calculate the posterior probabilities

Use the tree, observed states at the leaves, branch lengths and the JC69, calculate the posterior probability of [A,G,C,T] at node 15.
A
с
G
C
1
3
5
7
9
с
2
(12)
(11)
C
4
(10)
(13)
(14)
с
6
15
A
8

# Use this character state vector indicating
# the nucleotide at leaf nodes 1-8
sitel=["A","c","c","c","G","C","C","A"]
# Use this tree structure
tree4 {
"branch": 1.1}],
15: ['N', { "node": 14, "branch": 0.02}, {"node" : 8,
14: ['N', { "node": 13, "branch": 0.11}, {"node": 7, "branch": 1.2}],
13: ['N',{"node": 12, "branch": 0.12}, {"node": 6, "branch": 0.8}],
12: ['N',{"node": 11, "branch": 0.64}, {"node": 9, "branch": 0.11}],
11: ['N', { "node": 3, "branch": 0.26}, {"node": 10, "branch": 0.24}],
10: ['N', { "node": 4, "branch": 0.02}, {"node": 5, "branch": 0.08}],
9: ['N',{"node": 1, "branch": 0.4}, {"node": 2, "branch": 0.6}]
}
for i in range(1, 9):
tree4[i] = ['L']
#JC69 model to generate Q matrix
def JC69():
np. full ((4,4), 0.25)
np. fill_diagonal (0,-.75)
Q
Q/0.75
return Q
#Initialize rate matrix
JC69 ( )
# Answer

Expert Solution

Trending now

This is a popular solution!

Step by step

Solved in 3 steps

SEE SOLUTION Check out a sample Q&A here

Knowledge Booster

Learn more about

Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, computer-science and related others by exploring similar questions and additional content below.

Similar questions