2. A growing understanding of how proteins fold allows researchers to make predictions about protein structure from sequence data alone. Use your knowledge of protein structure to make predictions about the secondary and tertiary structure of the following 28-residue amino acid sequence. a. Where might an intrachain disulfide bond form? 1 2 3 4 5 6 7 89 10 Ile-Ala-His-Thr-Tyr-Gly-Pro-Phe-Glu-Ala 11 12 13 14 15 16 17 18 19 20 Ala-Met-Cys-Lys-Trp-Glu-Ala-Gln-Pro-Asp- 21 22 23 24 25 26 27 28 Gly-Met-Glu-Cys-Ala-Phe-His-Arg b. If this sequence is part of a larger protein, where would you expect to find each of the following amino acid residues, (Asp, Ile, Thr, Ala, Gin, Lys, Phe) On the surface of the protein, or buried in its core? Why? c. Name a few pairs of residues that could form salt bridges (electrostatic interactions) at pH=7.4. d. Would you expect this amino acid sequence to be positively or negatively charged at pH=7.4?

Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
Section: Chapter Questions
Problem 1P
Question

Please help me solve 2. Explain the process in detail

2. A growing understanding of how proteins fold allows
researchers to make predictions about protein structure
from sequence data alone. Use your knowledge of protein
structure to make predictions about the secondary and
tertiary structure of the following 28-residue amino acid
sequence.
a. Where might an intrachain disulfide bond form?
1
2
3
4
5
6
7
89 10
Ile-Ala-His-Thr-Tyr-Gly-Pro-Phe-Glu-Ala
11
12 13
14 15
16
17
18 19
20
Ala-Met-Cys-Lys-Trp-Glu-Ala-Gln-Pro-Asp-
21 22 23 24 25 26 27 28
Gly-Met-Glu-Cys-Ala-Phe-His-Arg
b. If this sequence is part of a larger protein, where would you expect to find each of the following
amino acid residues, (Asp, Ile, Thr, Ala, Gin, Lys, Phe) On the surface of the protein, or buried in
its core? Why?
c. Name a few pairs of residues that could form salt bridges (electrostatic interactions) at pH=7.4.
d. Would you expect this amino acid sequence to be positively or negatively charged at pH=7.4?
Transcribed Image Text:2. A growing understanding of how proteins fold allows researchers to make predictions about protein structure from sequence data alone. Use your knowledge of protein structure to make predictions about the secondary and tertiary structure of the following 28-residue amino acid sequence. a. Where might an intrachain disulfide bond form? 1 2 3 4 5 6 7 89 10 Ile-Ala-His-Thr-Tyr-Gly-Pro-Phe-Glu-Ala 11 12 13 14 15 16 17 18 19 20 Ala-Met-Cys-Lys-Trp-Glu-Ala-Gln-Pro-Asp- 21 22 23 24 25 26 27 28 Gly-Met-Glu-Cys-Ala-Phe-His-Arg b. If this sequence is part of a larger protein, where would you expect to find each of the following amino acid residues, (Asp, Ile, Thr, Ala, Gin, Lys, Phe) On the surface of the protein, or buried in its core? Why? c. Name a few pairs of residues that could form salt bridges (electrostatic interactions) at pH=7.4. d. Would you expect this amino acid sequence to be positively or negatively charged at pH=7.4?
Expert Solution
steps

Step by step

Solved in 2 steps

Blurred answer
Similar questions
  • SEE MORE QUESTIONS
Recommended textbooks for you
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781319114671
Author:
Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:
W. H. Freeman
Lehninger Principles of Biochemistry
Lehninger Principles of Biochemistry
Biochemistry
ISBN:
9781464126116
Author:
David L. Nelson, Michael M. Cox
Publisher:
W. H. Freeman
Fundamentals of Biochemistry: Life at the Molecul…
Fundamentals of Biochemistry: Life at the Molecul…
Biochemistry
ISBN:
9781118918401
Author:
Donald Voet, Judith G. Voet, Charlotte W. Pratt
Publisher:
WILEY
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781305961135
Author:
Mary K. Campbell, Shawn O. Farrell, Owen M. McDougal
Publisher:
Cengage Learning
Biochemistry
Biochemistry
Biochemistry
ISBN:
9781305577206
Author:
Reginald H. Garrett, Charles M. Grisham
Publisher:
Cengage Learning
Fundamentals of General, Organic, and Biological …
Fundamentals of General, Organic, and Biological …
Biochemistry
ISBN:
9780134015187
Author:
John E. McMurry, David S. Ballantine, Carl A. Hoeger, Virginia E. Peterson
Publisher:
PEARSON