PRESCOTT'S MICROBIOLOGY
11th Edition
ISBN: 2818440045677
Author: WILLEY
Publisher: MCG
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Chapter 19.4, Problem 2CC
List the differences between distance-based and character-based methods for constructing a phylogenetic tree. Which type is maximum parsimony? Explain your answer.
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Briefly describe differences among the distance approach, the maximum parsimony approach, and the maximum likelihood approach to the reconstruction of phylogenetic trees.
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Chapter 19 Solutions
PRESCOTT'S MICROBIOLOGY
Ch. 19.1 - What is a natural classification? What microbial...Ch. 19.1 - Prob. 2CCCh. 19.1 - Consider the finding that bacteria capable of...Ch. 19.2 - What is the difference between a microbial species...Ch. 19.2 - Why is it important to have a type strain for each...Ch. 19.2 - The genus Salmonella was once thought to contain...Ch. 19.3 - What are the advantages of using each major group...Ch. 19.3 - Why is rRNA so suitable for determining...Ch. 19.3 - Prob. 3CCCh. 19.4 - Could a phylotype be considered an OTU? What about...
Ch. 19.4 - List the differences between distance-based and...Ch. 19.4 - Prob. 3CCCh. 19.4 - You are building a tree based on 16S rRNA sequence...Ch. 19.4 - Is HGT involved in movement of genes in the core...Ch. 19.5 - On what evidence is this hypothesis based?Ch. 19.5 - Construct a scenario in which each of the...Ch. 19.5 - Define ecotype. Do you think it is necessary to...Ch. 19.5 - What is the difference between the core genome and...Ch. 19.5 - Of the following genes, which do you think are...Ch. 19.5 - Prob. 4CCCh. 19.6 - Prob. 1CCCh. 19.6 - Describe two different situations in which it...Ch. 19 - Prob. 1RCCh. 19 - Prob. 2RCCh. 19 - Prob. 3RCCh. 19 - Prob. 4RCCh. 19 - Prob. 5RCCh. 19 - Prob. 6RCCh. 19 - Consider the fact that the use of 16S rRNA...Ch. 19 - You have recently established a pure culture of a...Ch. 19 - Prob. 3ALCh. 19 - Prob. 4ALCh. 19 - Prob. 5ALCh. 19 - Prob. 6ALCh. 19 - Prob. 7AL
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- Describe the two methods that are used to identify similarity between species when creating phylogenetic trees.arrow_forwardExplain the steps for Constructing a species-level phylogenetic tree usingDNA sequences ?arrow_forwardWhich of the following best explains why coalescent-based phylogenetic inference is important in the age of phylogenomics? A) Coalescent-based methods directly model gene tree histories independently to infer the species tree in a summary-based manner, which is important for phylogenomic analysis were hundreds to thousands of gene histories are analyzed. B) Coalescent-based methods have the most advanced evolutionary models of molecular evolution, which is important for phylogenomic analysis were hundreds to thousands of gene histories are analyzed. C) Coalescent-based methods are no more important than other types of phylogenetic inference, even for phylogenomic analyses. D) None of the above.arrow_forward
- Sequence data from OTUs are provided in the table below with values provided as (percentage distance x 1000) measurements. Determine the phylogenetic tree from the data in the table below using the UPGMA procedure mentioned in class. Berenstain Bear Berentstain Bear Care Bear Gummi Bear Paddington Bear Care Bear 160 Gummi Bear 150 40 Paddington Bear 80 130 120 Place each OTU in the correct box on the appropriate tree below. Do not label the incorrect tree. Care Bear Gummi Bear Berenstain Bear Paddington Beararrow_forwardFor the E.coli. bacteria (prokaryotic species) and humans (eukaryotic species), show photos of their location in the phylogenetic tree, and their clade.arrow_forwardCompare phylogenetic trees created using DNA data with phylogenetic trees created using chromosomal banding patterns. Which technique do you think is more valuable and why?arrow_forward
- The approach to estimating phylogenetic trees is most like the approach of which species concept? 2) A) Morphological species concept B) Biological species conceptC) Subspecies concept D) Phylogenetic species concept Then explain why the answer is correct and the rest are inccorect.arrow_forwardWould a protein encoded on the core genome or one encoded only on the pan-genome be best to use in constructing a phylogenetic tree? Explain your answerarrow_forwardThe genome relatedness of different organisms can be shown with a phylogenetic tree constructed based on DNA sequence. (1) Why DNA sequences could be used to deduce genome relationship? (2) What else may be used to suggest the relatedness of different genomes?arrow_forward
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