PRESCOTT'S MICROBIO W/PROCTORIO
11th Edition
ISBN: 9781264731060
Author: WILLEY
Publisher: MCG
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Chapter 18.5, Problem 3CC
Retrieve, Infer, Apply
Compare and contrast metagenomics with metatranscriptomics.
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1) Examine the quality of the raw sequencing data
2) Trim low quality sequences and sequencing adapters from the raw reads
3) Align trimmed reads against the reference genome
4) Count number of reads mapped per annotated gene
5) Differential expression analysis
6) Visualize sequencing reads aligned to the reference genome
7) Gene set enrichment analysis (GSEA)
Choices:
Google Colab
UCSC Genome Browser
fasterq-dump
MultiQC
BLAST
DESeq2
STAR
Gorilla
featureCounts
SNPEff
samtools flagstat
BWA mem
Integrative Genome Viewer (IGV)
LoFreq
Fastp
FastQC
align.seq
2) Trim low quality sequences and sequencing adapters from the raw reads
3) Align trimmed reads against the reference genome
4) Count number of reads mapped per annotated gene
5) Differential expression analysis
6) Visualize sequencing reads aligned to the reference genome
7) Gene set enrichment analysis (GSEA)
Choices:
Google Colab
UCSC Genome Browser…
Compare 2D polyacrylamide gel electrophoresis to LC-MS as a proteomics technique to identify differences between patients with a disease and controls without the disease.
Autodock, Gold and Glide are other bioinformatics tools that are widely utilized by many
researchers nowadays especially in drug discovery. Briefly explain their applications in this
area of research.
Chapter 18 Solutions
PRESCOTT'S MICROBIO W/PROCTORIO
Ch. 18.1 - MICRO INQUIRY What is the function of the 3-OH...Ch. 18.1 - MICRO INQUIRY Why is it important that identical...Ch. 18.2 - MICRO INQUIRY Which step (or steps) in this...Ch. 18.2 - Retrieve, Infer, Apply Why is the Sanger technique...Ch. 18.2 - Retrieve, Infer, Apply Explain the difference...Ch. 18.2 - Retrieve, Infer, Apply Why does reversible chain...Ch. 18.2 - Prob. 4CCCh. 18.2 - Retrieve, Infer, Apply Suggest a medical and an...Ch. 18.3 - Retrieve, Infer, Apply NGS techniques are...Ch. 18.3 - Retrieve, Infer, Apply Examine figure 18.8. How...
Ch. 18.4 - Prob. 1MICh. 18.4 - Prob. 1CCCh. 18.4 - Prob. 2CCCh. 18.4 - Prob. 3CCCh. 18.5 - Figure 18.12 Metabolic Pathways and Transport...Ch. 18.5 - Prob. 2MICh. 18.5 - Prob. 3MICh. 18.5 - Prob. 1CCCh. 18.5 - Retrieve, Infer, Apply How might the following...Ch. 18.5 - Retrieve, Infer, Apply Compare and contrast...Ch. 18.5 - Retrieve, Infer, Apply Why does two-dimensional...Ch. 18.5 - Retrieve, Infer, Apply What is the difference...Ch. 18.5 - Retrieve, Infer, Apply Describe a ChIP-Seq...Ch. 18.7 - Prob. 1MICh. 18.7 - Retrieve, Infer, Apply Cite an infectious disease...Ch. 18.7 - Prob. 2CCCh. 18.7 - Prob. 3CCCh. 18 - Prob. 1RCCh. 18 - Prob. 2RCCh. 18 - Prob. 3RCCh. 18 - Prob. 4RCCh. 18 - Prob. 5RCCh. 18 - Prob. 1ALCh. 18 - Prob. 2ALCh. 18 - You are developing a new vaccine for a pathogen....Ch. 18 - Prob. 4AL
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