PRESCOTT'S MICROBIO W/PROCTORIO
PRESCOTT'S MICROBIO W/PROCTORIO
11th Edition
ISBN: 9781264731060
Author: WILLEY
Publisher: MCG
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Chapter 18.5, Problem 3CC

Retrieve, Infer, Apply

Compare and contrast metagenomics with metatranscriptomics.

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Need bioinformatics help. 1) Examine the quality of the raw sequencing data 2) Trim low quality sequences and sequencing adapters from the raw reads 3) Align trimmed reads against the reference genome 4) Count number of reads mapped per annotated gene 5) Differential expression analysis 6) Visualize sequencing reads aligned to the reference genome 7) Gene set enrichment analysis (GSEA) Choices: Google Colab UCSC Genome Browser fasterq-dump MultiQC BLAST DESeq2 STAR Gorilla featureCounts SNPEff samtools flagstat BWA mem Integrative Genome Viewer (IGV) LoFreq Fastp FastQC align.seq 2) Trim low quality sequences and sequencing adapters from the raw reads 3) Align trimmed reads against the reference genome 4) Count number of reads mapped per annotated gene 5) Differential expression analysis 6) Visualize sequencing reads aligned to the reference genome 7) Gene set enrichment analysis (GSEA) Choices: Google Colab UCSC Genome Browser…
Compare 2D polyacrylamide gel electrophoresis to LC-MS as a proteomics technique to identify differences between patients with a disease and controls without the disease.
Autodock, Gold and Glide are other bioinformatics tools that are widely utilized by many researchers nowadays especially in drug discovery. Briefly explain their applications in this area of research.
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