You are fresh recruits to a molecular biology laboratory, and your new boss has tasked you to study mutations in NRAS, a gene that she suspects is involved in cancer pathogenesis. Task A: Polymerase Chain Reaction Master Mix Your first task is to isolate and amplify the NRAS gene from cDNA extracted from different samples through PCR. You will need to run a total of 7 PCRs: 3 normal samples, 3 cancerous samples, and 1 negative control. To make things easier in the lab, when running multiple reactions, the components are prepared not individually, but as a master mix—all the components for multiple reactions are prepared in bulk, except for the template DNA, which is added separately once the master mix has been distributed into individual tubes. The table below lists the different components for PCR, the available stock concentrations of these components, and the needed working concentrations for the PCR itself. Complete the table by supplying the needed volumes of each component for a single reaction and for the master mix (the first row has been filled in as an example).

Biochemistry
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ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
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Chapter1: Biochemistry: An Evolving Science
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You are fresh recruits to a molecular biology laboratory, and your new boss has tasked you to
study mutations in NRAS, a gene that she suspects is involved in cancer pathogenesis.


Task A: Polymerase Chain Reaction Master Mix


Your first task is to isolate and amplify the NRAS gene from cDNA extracted from different
samples through PCR. You will need to run a total of 7 PCRs: 3 normal samples, 3 cancerous
samples, and 1 negative control. To make things easier in the lab, when running multiple
reactions, the components are prepared not individually, but as a master mix—all the
components for multiple reactions are prepared in bulk, except for the template DNA, which is
added separately once the master mix has been distributed into individual tubes.


The table below lists the different components for PCR, the available stock concentrations of these
components, and the needed working concentrations for the PCR itself. Complete the table by
supplying the needed volumes of each component for a single reaction and for the master mix
(the first row has been filled in as an example).

 

#2 Mol Bio Mutation QUESTIONS X +
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PDF #2 Mol Bio Mutation QUESTIONS.pdf
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PCR Component
Buffer for Taq
polymerase
Forward primer
Reverse primer
dNTPs
Taq polymerase
Sterile distilled
deionized water
Template
O
Stock
concentration
8:
10X
40 uM
10 UM
25 mM
200 U/ul
n/a
Total
400 ng/ul
Total
79
Abrir con
Working
concentration
Lucid Coggle APA Diagrama
Página 1/
1X
1.0 uM
1.0 uM
1 mM
1 U/ul
(to fill reaction
volume to 10 ul)
40 ng/ul
3
Volume for 1
reaction (UL)
1.0
Q +
10.0
Simuladores y labor...
9.0 ul
63.0 ul
1.0 (added separately to each reaction
after master mix is distributed to
different tubes)
P
Volume for 7
reactions (µL)
7.0
70.0
>
Étudiant | Campus...
ESP
0 X
Actualizar
04:19 p.m.
09/08/2022
Transcribed Image Text:#2 Mol Bio Mutation QUESTIONS X + ← → C ✰ drive.google.com/file/d/1mcDi8k1 KtP3uaF-SQ-QgeLgnjxj20dqA/view M Gmail ▸ YouTube Maps PDF #2 Mol Bio Mutation QUESTIONS.pdf I Escribe aquí para buscar A good night's slee... G games Piktochart > NCBI PCR Component Buffer for Taq polymerase Forward primer Reverse primer dNTPs Taq polymerase Sterile distilled deionized water Template O Stock concentration 8: 10X 40 uM 10 UM 25 mM 200 U/ul n/a Total 400 ng/ul Total 79 Abrir con Working concentration Lucid Coggle APA Diagrama Página 1/ 1X 1.0 uM 1.0 uM 1 mM 1 U/ul (to fill reaction volume to 10 ul) 40 ng/ul 3 Volume for 1 reaction (UL) 1.0 Q + 10.0 Simuladores y labor... 9.0 ul 63.0 ul 1.0 (added separately to each reaction after master mix is distributed to different tubes) P Volume for 7 reactions (µL) 7.0 70.0 > Étudiant | Campus... ESP 0 X Actualizar 04:19 p.m. 09/08/2022
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