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1. What is the significance of the formation of the colored product in the oxidase test?
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- Pyridoxal phosphate (PLP) is a coenzyme for the enzyme ornithine aminotransferase. The enzyme was purified from cells grow in PLP = deficient media as well as from cells grown in media that contained pyridoxal phosphate. The stability of the two different enzyme preparations was then measured by incubating the enzyme at 37°C for different lengths of time and then assaying for the amount of enzyme activity remaining. The following results were obtained. (a) Why does the amount of active enzyme decrease with the time of incubation? (b) Why does the amount of enzyme from the PLP deficient cells decline more rapidly?1. Demonstrate your understanding whether carrier-free biocatalysts should or should not be considered as good biocatalysts. You discussion must be in detail and related to biocatalysis. You can provide detail explanation or provide example. 2. Compare and contrast the following pairs of terms. Relate their similarities and differences to applications in biocatalysis. Zymonomas sp. and Saccharomyces sp.1a) Why do you have to rinse the entire gel apparatus with distilled water after running the gel? 1b) Where should the lactate dehydrogenase protein run on your SDS-PAGE gel and why? (closer to the top, closer to the bottom, somewhere in the middle)
- 3. (a) The activity of the Pentose Phosphate Pathway is commonly quantified by measuring 14CO2 production from C-14 labeled glucose. In this assay, glucose is metabolized aerobically by cells or tissue slices; both [1-14C] glucose and [6-14C] glucose are employed separately but in parallel. This classical method, thus, requires two separate assay mixtures. Which radioactive isotopomer of glu- cose releases 14 CO2 generated by the Pentose Phosphate Pathway? Confirm your conclusion by drawing the intermediates of the oxidative phase of the PPP with structural formulas, starting with glucose-6-phosphate. Name the intermediates and indicate enzymes. (b) ( Because the assay protocol requires aerobic incubation of cells or tis- sue slices with isotopically labeled glucose in parallel assays, what is the purpose of the other radioactive glucose derivative? To answer this question base your answer using the diagram on the right. O2 NADH CH₂OH + 2 NAD+ HO HO + 2 Pj 2 CO + 2 ATP HO OH 2 ADP CH3…3. (a) The activity of the Pentose Phosphate Pathway is commonly quantified by measuring 14CO2 production from C-14 labeled glucose. In this assay, glucose is metabolized aerobically by cells or tissue slices; both [1-14C] glucose and [6-14C] glucose are employed separately but in parallel. This classical method, thus, requires two separate assay mixtures. Which radioactive isotopomer of glu- cose releases 14 CO2 generated by the Pentose Phosphate Pathway? Confirm your conclusion by drawing the intermediates of the oxidative phase of the PPP with structural formulas, starting with glucose-6-phosphate. Name the intermediates and indicate enzymes. (b) ( Because the assay protocol requires aerobic incubation of cells or tis- sue slices with isotopically labeled glucose in parallel assays, what is the purpose of the other radioactive glucose derivative? To answer this question base your answer using the diagram on the right. O + 2 NADH CH₂OH + 2 NAD+ ○ HO HO + 2 Pi 2 CO + 2 ATP HO OH 2 ADP…One of your colleagues has obtained a sample of muscle phosphorylase b that is known to be relatively inactive. She has approached you for advice on how to set up an appropriate assay. She has the following items available, not all of which are appropriate for this study. Help her out by selecting the items that she should use and what their purpose is in the assay, and then explain why each of the other items would not be useful. 1. 100 UM AMP 2. 100 UM GTP 3.100 uM glucose 4. 100 uM glucose 6-phosphate 5. Branched glycogen 6. Amylose (i.e. unbranched glycogen) 7.50 mM HEPES buffer, pH 7.5 8. 50 mM potassium phosphate buffer, pH 7.5 Write out a short explanation for each of the above items, and upload your answers by the due date.
- Gelatin Hydrolase: 1. Explain the incubation conditions 2. Explain the reagents being added 3. Explain the observations in Gelatin Hydrolase 4. Explain the interpretations in Gelatin HydrolaseLysosyme catalyzes the hydrolysis of the carbohydrate linkage in part of the bacterial cell wall (peptidoglycan layer). 1. Propose a mechanism using general acid/base catalysis 2. Propose a mechanism using covalent catalysis. (An intermediate has been observed that indicates a glycosidic bond to the aspartate).(nmol/min) 30 31 32 33 34 35 A student performed a lactate dehydrogenase (LDH) assay multiple times with varying amounts of substrate added to the reaction mixture. All other conditions were kept the same. This graph shows the results observed: 100 75 10 20 30 40 Lactate concentration (nmol/ml) Why is this student not detecting a linear increase in reaction rate at higher substrate concentrations? T TTArial v 3 (12pt) * T.=,三, 日iu 4:03 PM to search 5/6/2021
- Sydney Brennen isolated Salmonella typhimurium mutants that were implicated in the biosynthesis of tryptophan and would not grow on minimal medium supplemented with intermediates in tryptophan biosynthesis, some mutants were able to grow while others remained unable to grow. Review the data attached to order the biosynthetic pathway by both enzymatic step and by intermediate biomolecule. Label the step impacted by each of the mutant cell lines.1. Describe the specificity of glucose oxidase. Compare it with the three other methods.8. Structures of three coenzymes involved in Phase II conjugation reactions are shown below. For each coenzyme, circle the portion of the coenzyme that is transferred during metabolic reaction. NH, CH NH, COO CH, H2C OH CH НО O-UDP HC H H ОН он он UDP-Glucuronate S-Adenosylmethionine (S-AdoMet) SCo AcetylSCo