the ratio of the protonated and deprotonated forms of guanine. (2) the fraction of protonated guanine (i.e., HA / (HA+ A-)

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cids and bases. Guanine is weakly acidic. It can lose a proton at higher pH, which disrupts base pairing and DNA
structure. (See section 1.3 of your textbook and the lecture slides.)
SACZALLAES
H
Guanine (G)
Biochemistry P14
Seventh Edition
2012 W. H. Freeman and Company
NH₂
pk₂=9.7
H
+H*
NH₂
1.0
0.8
0
0.6
0.4-
0.2
0
gure 1.16
8
9
pH
10
11
A) Write the Henderson-Hasselbalch equation for the acid dissociation reaction of guanine. Identify the conjugate acid
and conjugate base (HA and A-) for guanine forms.
B) If the pK₂=9.7 (see above), What is the value of the acid dissociation equilibrium Ka?
C)
At pH 7.4, calculate (1) the ratio of the protonated and deprotonated forms of guanine. (2) the fraction of
protonated guanine (i.e., HA / (HA+ A-)
D) The titration curve above shows DNA being titrated with a strong base, such as NaOH. Calculate the precise
fraction of DNA in the double helical form at three different pH values: 7.4, 8.4, and 9.4. [Hint: Note that the
double-helical form requires the protonation of guanine. Therefore, you will need to calculate the fraction in part C
(above).]
Transcribed Image Text:cids and bases. Guanine is weakly acidic. It can lose a proton at higher pH, which disrupts base pairing and DNA structure. (See section 1.3 of your textbook and the lecture slides.) SACZALLAES H Guanine (G) Biochemistry P14 Seventh Edition 2012 W. H. Freeman and Company NH₂ pk₂=9.7 H +H* NH₂ 1.0 0.8 0 0.6 0.4- 0.2 0 gure 1.16 8 9 pH 10 11 A) Write the Henderson-Hasselbalch equation for the acid dissociation reaction of guanine. Identify the conjugate acid and conjugate base (HA and A-) for guanine forms. B) If the pK₂=9.7 (see above), What is the value of the acid dissociation equilibrium Ka? C) At pH 7.4, calculate (1) the ratio of the protonated and deprotonated forms of guanine. (2) the fraction of protonated guanine (i.e., HA / (HA+ A-) D) The titration curve above shows DNA being titrated with a strong base, such as NaOH. Calculate the precise fraction of DNA in the double helical form at three different pH values: 7.4, 8.4, and 9.4. [Hint: Note that the double-helical form requires the protonation of guanine. Therefore, you will need to calculate the fraction in part C (above).]
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