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- 7. Label the three main parts of a nucleic acid in Figure 3. (b) (a) 0 0 O-P-0-P-O-P-O-CH2 0 03 Figure 3 0 (c) CHH CH H ㅐ|C|우 HGE 8 H 3. C-C2 НО OH (H) NHzDraw the Lewis structures and determine which of these molecules has a central atom that unavoidably violates the octet rule. XeF2 OSO2 OPCI3 CS₂ OBCI 3 NO3 000 O SO3 IFS NH3 x1) Which of the following statement(s) regarding the ends of polysaccharides are true? All polysaccharides have at least one reducing end. Some polysaccharides may have no reducing end. Some polysaccharides may have no non-reducing ends. All polysaccharides have a N-glycosidic bond at their reducing ends. none of the above 2) The transformation of a monosaccharide into its ______ occurs easily and does not require the assistance of a catalyst. epimer anomer sugar alcohol diastereomer zwitterion
- 5. (a) How many covalent bonds does each of the following type of atom typically form? (ii) С (i) H (ii) О (iv) N (b) How is the number of covalent bonds formed by an atom related to its number of valence electrons? K/u T/IIf the protein you are studying is known to bind the molecule shown below, what types of amino acids would you expect to be forming interactions at each of the numbered positions. Explain your reasoning for your choices 2 0 N* H- H H. 4. 3. 1,9. a) Nucleic acids, proteins, and polysaccharides all share a similar structure. How is the structure of lipids different from these macromolecules?
- 2. | Calculate the overall charge (pH 7) on the following three polypeptides and answer the questions below. Assume the following pKa values: N-terminal -NH3®, 7.0; all -COOH groups, 4.0; Arg, 12.5; Cys, 8.4; His, 6.0; Lys, 10.0; Tyr, 10.0. (A) Ser-Tyr-Ser-Met-Glu-His-Phe-Arg-Trp-Gly-Lys-Pro-Val-Gly-Lys-Lys-Arg-Arg-Pro-Val-Lys-Val-Tyr-Pro-Asp-Ala -Gly- Glu-Asp-Gln- Ser-Ala-Glu-Ala-Phe-Pro-Leu-Arg-Glu-Phe (B) Ser-Tyr-Ser-Met-Glu–His-Phe-Arg–Trp–Gly-Ala-Pro-Val-Gly-Glu-Glu-Cys-Asp-Pro-Val-Glu–Val-Tyr-Pro-Asp- Ala-Gly-Glu-Asp-Gln-Ser-Ala-Glu-Ala-Phe-Pro-Leu-Glu-Phe-Cys-Ser-Tyr-Ser-Met-Glu-His-Phe-Asp-Trp-Gly- Asp-Pro-Val-Gly-Pro-Asp-Ala-Gly-Asp-Gln-Pro-Val-Gly-Glu-Glu-Cys-Asp-Pro-Val-Glu-Val-Tyr-Pro-Asp-Ala | (C) Gly-Ser-Val-Arg-Asp-Pro-Val-Lys-Glu–Val-Tyr-Pro-Asp- Lys-Ala-Gly-Arg-Glu-Ser-Arg-Ala (a) Which of the three peptides would elute first from a gel filtration column? (b) Which of the three peptides would migrate the fastest on SDS-PAGE (c) Which of the three peptides could be…1. Draw a circle around and give the name of each functional group in the following twomolecules. (Note: each line represents a covalent bond. If no atom is shown, assume there’s a carbon there.)4. A protein solution is prepared by dissolving 350 µg of protein in 200 µL of water. A 150 μL sample of this solution is diluted to a total volume of 4.5 mL. How many mg of protein will be in a 2 mL sample of the diluted protein solution? Space to show your workings:
- 7. You want to separate these four proteins in a mixture: Isoelectric point Mol. Weight (kDa) Protein A 4.1 80 Protein B 9.0 81 Protein C 8.8 37 Protein D 3.9 172 Which of the following would be the best order in which to run chromatography columns? A) Anion-exchange at pH 3, then size exclusion B) Cation-exchange at pH 3, then size exclusion C) Cation-exchange at pH 3, then anion-exchange at pH 3 D) Anion-exchange at pH 3, then cation-exchange at pH 3 E) Size exclusion, then cation-exchange at pH 3 F) Size exclusion, then anion-exchange at pH 32. | Calculate the overall charge (pH 7) on the following three polypeptides and answer the questions below. Assume the following pKa values: N-terminal –NH3®, 7.0; all -COOH groups, 4.0; Arg, 12.5; Cys, 8.4; His, 6.0; Lys, 10.0; Tyr, 10.0. (A) Ser-Tyr-Ser-Met-Glu-His-Phe-Arg-Trp-Gly-Lys–Pro–Val–Gly–Lys–Lys–Arg-Arg-Pro-Val-Lys–Val-Tyr-Pro-Asp-Ala -Gly- Glu-Asp-GIn– Ser-Ala-Glu-Ala-Phe-Pro-Leu-Arg-Glu-Phe (B) Ser-Tyr-Ser-Met-Glu-His-Phe-Arg-Trp-Gly-Ala-Pro-Val-Gly-Glu-Glu–Cys-Asp-Pro-Val-Glu–Val–Tyr-Pro-Asp- Ala-Gly-Glu-Asp-Gln-Ser-Ala-Glu-Ala-Phe-Pro-Leu-Glu-Phe-Cys-Ser-Tyr-Ser-Met-Glu–His-Phe-Asp-Trp-Gly- Asp-Pro-Val-Gly-Pro-Asp-Ala-Gly-Asp-Gln-Pro-Val–Gly–Glu-Glu-Cys-Asp-Pro–Val-Glu–Val–Tyr-Pro-Asp-Ala (C) Gly-Ser-Val-Arg-Asp-Pro-Val-Lys-Glu-Val-Tyr-Pro-Asp- Lys–Ala-Gly-Arg-Glu-Ser-Arg-Ala (d) Which of the three peptides would migrate the closest to the anode in isoelectric focusing? (e) Which of the above peptides would elute last from a gel filtration column? (f) Which of the three…3. For each of the following interactions, tell me two amino acids that can form that interaction (between their R groups) at a pH = 7 and sketch the interaction. i. ii. H-bond Charge-charge interaction