upposed to count how many times a certain base (represented as a character variable in Python) appears in a dna sequence (represented as a string variable in Python): def count1(dna, base):     i = 0     for c in dna:         if c == base:         i += 1     return i   def count2(dna, base):     i = 0     for j in range(len(dna)):         if dna[j] == base:         i += 1     return i

Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
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The following functions are all supposed to count how many times a certain base (represented as a character variable in Python) appears in a dna sequence (represented as a string variable in Python):

  1. def count1(dna, base):
  2.     i = 0
  3.     for c in dna:
  4.         if c == base:
  5.         i += 1
  6.     return i
  7.  
  8. def count2(dna, base):
  9.     i = 0
  10.     for j in range(len(dna)):
  11.         if dna[j] == base:
  12.         i += 1
  13.     return i
  14.  
  15. def count3(dna, base):
  16.     match = [c == base for c in dna]
  17.     return sum(match)
  18.  
  19. def count4(dna, base):
  20.     return dna.count(base)
  21.  
  22. def count5(dna, base):
  23.     return len([i for i in range(len(dna)) if dna[i] == base])
  24.  
  25. def count6(dna,base):
  26.     return sum(c == base for c in dna)

Which of the correct functions defined in the above exercise is the fastest?  Hint. You will need to generate a very large string to test them on, and the function clock() from the time module to time each function.

  1. count2
  2. count3
  3. count5
  4. count4
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Which of the correct functions defined in the above exercise is the fastest?  Hint. You will need to generate a very large string to test them on, and the function clock() from the time module to time each function.

  1. count2
  2. count3
  3. count5
  4. count4
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