Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA

Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
icon
Related questions
Question

Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA 

1. Assume the following scoring matrix.
А
G
A
1
-1
-1
-2
-1
T
1
-1
-1
-1
C
2
-1
-1
G
1
-1
a. Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG
and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.
(Si-1.j-1+ 8(v;, w;)
= max { Si-1,j + 8 (vị, –)
Sij
Sij-1+ 8(-, w;)
G
C
A
T
C
A
1
2
3
4
5
6
7
v=
1
A
2
G
3
C
4
5
C
6.
C
7
G
8
b. What is the score and global alignment between v and w?
Transcribed Image Text:1. Assume the following scoring matrix. А G A 1 -1 -1 -2 -1 T 1 -1 -1 -1 C 2 -1 -1 G 1 -1 a. Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula. (Si-1.j-1+ 8(v;, w;) = max { Si-1,j + 8 (vị, –) Sij Sij-1+ 8(-, w;) G C A T C A 1 2 3 4 5 6 7 v= 1 A 2 G 3 C 4 5 C 6. C 7 G 8 b. What is the score and global alignment between v and w?
Expert Solution
trending now

Trending now

This is a popular solution!

steps

Step by step

Solved in 3 steps with 4 images

Blurred answer
Knowledge Booster
Binary numbers
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, computer-science and related others by exploring similar questions and additional content below.
Recommended textbooks for you
Database System Concepts
Database System Concepts
Computer Science
ISBN:
9780078022159
Author:
Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:
McGraw-Hill Education
Starting Out with Python (4th Edition)
Starting Out with Python (4th Edition)
Computer Science
ISBN:
9780134444321
Author:
Tony Gaddis
Publisher:
PEARSON
Digital Fundamentals (11th Edition)
Digital Fundamentals (11th Edition)
Computer Science
ISBN:
9780132737968
Author:
Thomas L. Floyd
Publisher:
PEARSON
C How to Program (8th Edition)
C How to Program (8th Edition)
Computer Science
ISBN:
9780133976892
Author:
Paul J. Deitel, Harvey Deitel
Publisher:
PEARSON
Database Systems: Design, Implementation, & Manag…
Database Systems: Design, Implementation, & Manag…
Computer Science
ISBN:
9781337627900
Author:
Carlos Coronel, Steven Morris
Publisher:
Cengage Learning
Programmable Logic Controllers
Programmable Logic Controllers
Computer Science
ISBN:
9780073373843
Author:
Frank D. Petruzella
Publisher:
McGraw-Hill Education