Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA
Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA
Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
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Question
Fill out the dynamic

Transcribed Image Text:1. Assume the following scoring matrix.
А
G
A
1
-1
-1
-2
-1
T
1
-1
-1
-1
C
2
-1
-1
G
1
-1
a. Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG
and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.
(Si-1.j-1+ 8(v;, w;)
= max { Si-1,j + 8 (vị, –)
Sij
Sij-1+ 8(-, w;)
G
C
A
T
C
A
1
2
3
4
5
6
7
v=
1
A
2
G
3
C
4
5
C
6.
C
7
G
8
b. What is the score and global alignment between v and w?
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