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Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA

Database System Concepts

7th Edition

ISBN:9780078022159

Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan

Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan

Chapter1: Introduction

Section: Chapter Questions

Problem 1PE

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Question

Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA

1. Assume the following scoring matrix.
А
G
A
1
-1
-1
-2
-1
T
1
-1
-1
-1
C
2
-1
-1
G
1
-1
a. Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG
and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.
(Si-1.j-1+ 8(v;, w;)
= max { Si-1,j + 8 (vị, –)
Sij
Sij-1+ 8(-, w;)
G
C
A
T
C
A
1
2
3
4
5
6
7
v=
1
A
2
G
3
C
4
5
C
6.
C
7
G
8
b. What is the score and global alignment between v and w?

Process by which instructions are given to a computer, software program, or application using code.

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