Assume the following scoring matrix.     A T C G - A 1 -1 -1 -2 -1 T   1 -1 -1 -1 C     2 -1 -1 G       1 -1     Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.           w= G C A T C C A     0 1 2 3 4 5 6 7 v= 0                 T 1                 A 2                 G 3                 C 4                 T 5                 C 6                 C 7                 G 8                     What is the score and global alignment between v and w?

Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
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Question
  1. Assume the following scoring matrix.

 

 

A

T

C

G

-

A

1

-1

-1

-2

-1

T

 

1

-1

-1

-1

C

 

 

2

-1

-1

G

 

 

 

1

-1

 

 

  1. Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.

 

 

 

 

 

w=

G

C

A

T

C

C

A

 

 

0

1

2

3

4

5

6

7

v=

0

 

 

 

 

 

 

 

 

T

1

 

 

 

 

 

 

 

 

A

2

 

 

 

 

 

 

 

 

G

3

 

 

 

 

 

 

 

 

C

4

 

 

 

 

 

 

 

 

T

5

 

 

 

 

 

 

 

 

C

6

 

 

 

 

 

 

 

 

C

7

 

 

 

 

 

 

 

 

G

8

 

 

 

 

 

 

 

 

 

 

  1. What is the score and global alignment between v and w?
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