Assume the following scoring matrix. A T C G - A 1 -1 -1 -2 -1 T 1 -1 -1 -1 C 2 -1 -1 G 1 -1 Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula. w= G C A T C C A 0 1 2 3 4 5 6 7 v= 0 T 1 A 2 G 3 C 4 T 5 C 6 C 7 G 8 What is the score and global alignment between v and w?
Assume the following scoring matrix. A T C G - A 1 -1 -1 -2 -1 T 1 -1 -1 -1 C 2 -1 -1 G 1 -1 Fill out the dynamic programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula. w= G C A T C C A 0 1 2 3 4 5 6 7 v= 0 T 1 A 2 G 3 C 4 T 5 C 6 C 7 G 8 What is the score and global alignment between v and w?
Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
Related questions
Question
- Assume the following scoring matrix.
|
A |
T |
C |
G |
- |
A |
1 |
-1 |
-1 |
-2 |
-1 |
T |
|
1 |
-1 |
-1 |
-1 |
C |
|
|
2 |
-1 |
-1 |
G |
|
|
|
1 |
-1 |
- Fill out the dynamic
programming table for the global alignment between sequences v = TAGCTCCG and w = GCATCCA using the scoring matrix above. Use the following recursive scoring formula.
|
|
w= |
G |
C |
A |
T |
C |
C |
A |
|
|
0 |
1 |
2 |
3 |
4 |
5 |
6 |
7 |
v= |
0 |
|
|
|
|
|
|
|
|
T |
1 |
|
|
|
|
|
|
|
|
A |
2 |
|
|
|
|
|
|
|
|
G |
3 |
|
|
|
|
|
|
|
|
C |
4 |
|
|
|
|
|
|
|
|
T |
5 |
|
|
|
|
|
|
|
|
C |
6 |
|
|
|
|
|
|
|
|
C |
7 |
|
|
|
|
|
|
|
|
G |
8 |
|
|
|
|
|
|
|
|
- What is the score and global alignment between v and w?
Expert Solution
This question has been solved!
Explore an expertly crafted, step-by-step solution for a thorough understanding of key concepts.
Step by step
Solved in 3 steps with 4 images
Knowledge Booster
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, computer-science and related others by exploring similar questions and additional content below.Recommended textbooks for you
Database System Concepts
Computer Science
ISBN:
9780078022159
Author:
Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:
McGraw-Hill Education
Starting Out with Python (4th Edition)
Computer Science
ISBN:
9780134444321
Author:
Tony Gaddis
Publisher:
PEARSON
Digital Fundamentals (11th Edition)
Computer Science
ISBN:
9780132737968
Author:
Thomas L. Floyd
Publisher:
PEARSON
Database System Concepts
Computer Science
ISBN:
9780078022159
Author:
Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:
McGraw-Hill Education
Starting Out with Python (4th Edition)
Computer Science
ISBN:
9780134444321
Author:
Tony Gaddis
Publisher:
PEARSON
Digital Fundamentals (11th Edition)
Computer Science
ISBN:
9780132737968
Author:
Thomas L. Floyd
Publisher:
PEARSON
C How to Program (8th Edition)
Computer Science
ISBN:
9780133976892
Author:
Paul J. Deitel, Harvey Deitel
Publisher:
PEARSON
Database Systems: Design, Implementation, & Manag…
Computer Science
ISBN:
9781337627900
Author:
Carlos Coronel, Steven Morris
Publisher:
Cengage Learning
Programmable Logic Controllers
Computer Science
ISBN:
9780073373843
Author:
Frank D. Petruzella
Publisher:
McGraw-Hill Education