After gel electrophoresis, it is common to extract a protein (or proteins) from a band in the gel, digest the proteins with a protease such as chymotrypsin, and sequence the resulting peptide fragments. If a protein from a gel band is extracted, subjected to digestion with chymotrypsin, and then run on another gel under same conditions as the first gel BUT FOUND TO MIGRATE TO THE SAME POSITION on the gel, the most likely explanation is that (Assume that a control protein sample digested with the chymotrypsin enzyme gives the expected cleavage pattern.) no proteolysis occurred - something is wrong with the chymotrypsin active site. something is likely wrong with the 2nd gel. no proteolysis occurred - the protein doesn't contain any F, T, or W amino acids. no proteolysis occurred - the protein doesn't contain any K or R residues.

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After gel electrophoresis, it is common to extract a protein (or proteins) from a band in the gel, digest the proteins with a
protease such as chymotrypsin, and sequence the resulting peptide fragments. If a protein from a gel band is extracted,
subjected to digestion with chymotrypsin, and then run on another gel under same conditions as the first gel BUT
FOUND TO MIGRATE TO THE SAME POSITION on the gel, the most likely explanation is that
(Assume that a control protein sample digested with the chymotrypsin enzyme gives
the expected cleavage pattern.)
O no proteolysis occurred - something is wrong with the chymotrypsin active site.
something is likely wrong with the 2nd gel.
no proteolysis occurred - the protein doesn't contain any F, T, or W amino acids.
no proteolysis occurred - the protein doesn't contain any K or R residues.
Transcribed Image Text:After gel electrophoresis, it is common to extract a protein (or proteins) from a band in the gel, digest the proteins with a protease such as chymotrypsin, and sequence the resulting peptide fragments. If a protein from a gel band is extracted, subjected to digestion with chymotrypsin, and then run on another gel under same conditions as the first gel BUT FOUND TO MIGRATE TO THE SAME POSITION on the gel, the most likely explanation is that (Assume that a control protein sample digested with the chymotrypsin enzyme gives the expected cleavage pattern.) O no proteolysis occurred - something is wrong with the chymotrypsin active site. something is likely wrong with the 2nd gel. no proteolysis occurred - the protein doesn't contain any F, T, or W amino acids. no proteolysis occurred - the protein doesn't contain any K or R residues.
The catalytic triad for a serine protease (like chymotrypsin) always includes an amino acid side chain that can function as a
during the peptide cleavage reaction. The other residues in the catalytic triad employ
nucleophile for
during the reaction.
102/
57
CH2
H2C
195)
А
B
N:
CH2
D
None of these is correct.
O acid-base catalysis; general covalent catalysis
O acid-base catalysis; metal-lon catalysis
O covalent catalysis: general acid-base catalysis
Transcribed Image Text:The catalytic triad for a serine protease (like chymotrypsin) always includes an amino acid side chain that can function as a during the peptide cleavage reaction. The other residues in the catalytic triad employ nucleophile for during the reaction. 102/ 57 CH2 H2C 195) А B N: CH2 D None of these is correct. O acid-base catalysis; general covalent catalysis O acid-base catalysis; metal-lon catalysis O covalent catalysis: general acid-base catalysis
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