Brock Biology of Microorganisms (15th Edition)
15th Edition
ISBN: 9780134261928
Author: Michael T. Madigan, Kelly S. Bender, Daniel H. Buckley, W. Matthew Sattley, David A. Stahl
Publisher: PEARSON
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Chapter 13.6, Problem 1MQ
- What is the difference between the core and pan genomes of a given species?
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Chapter 13 Solutions
Brock Biology of Microorganisms (15th Edition)
Ch. 13.1 - What characteristics would have made the surface...Ch. 13.1 - How do we know when oceans were first present on...Ch. 13.1 - What lines of reasoning support the hypothesis...Ch. 13.1 - What is LUCA, and what is a plausible explanation...Ch. 13.2 - Why is the origin of cyanobacteria considered a...Ch. 13.2 - What caused the development of banded iron...Ch. 13.2 - What lines of evidence indicate that microbial...Ch. 13.2 - Why was the origin of cyanobacteria of such...Ch. 13.3 - What kinds of evidence support the three-domain...Ch. 13.3 - What is LUCA and what are some of its...
Ch. 13.3 - Which of the three domains is the least ancient?Ch. 13.3 - What evidence supports the classification of life...Ch. 13.4 - What evidence supports the idea that the...Ch. 13.4 - In what ways are modern eukaryotes a combination...Ch. 13.4 - Describe the different hypotheses for the...Ch. 13.4 - What is the endosymbiotic hypothesis for the...Ch. 13.5 - What are the different processes that give rise to...Ch. 13.5 - What is the difference between selection and...Ch. 13.5 - In the experiment of Figure 13.12, why did the...Ch. 13.5 - What is fitness? To what degree does fitness...Ch. 13.6 - What is the difference between the core and pan...Ch. 13.6 - What kind of recombination might have the greatest...Ch. 13.6 - What effects do deletions have on the evolution of...Ch. 13.6 - What are some processes that influence the content...Ch. 13.7 - How are DNA sequences obtained for phylogenetic...Ch. 13.7 - What does a phylogenetic tree depict?Ch. 13.7 - Prob. 3MQCh. 13.7 - What is the difference between a gene tree and an...Ch. 13.8 - What is the difference between taxonomy and...Ch. 13.8 - What are some key criteria from the phylogenetic...Ch. 13.8 - How many species of Bacteria and Archaea have been...Ch. 13.8 - What is the "species problem" and why is the...Ch. 13.9 - What class of genes is used in MLST analyses?Ch. 13.9 - How is ribotyping different from rep-PCR?Ch. 13.9 - What is FAME analysis?Ch. 13.9 - Prob. 1CRCh. 13.10 - What roles do culture collections play in...Ch. 13.10 - What is the IJSEM and what taxonomic function does...Ch. 13.10 - Why might viable cell cultures be of more use in...Ch. 13.10 - Prob. 1CRCh. 13 - Compare and contrast the physical and chemical...Ch. 13 - For the following sequences, construct the...Ch. 13 - Imagine that you have been given several bacterial...Ch. 13 - Imagine that you have discovered a new form of...
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- What does massively parallel sequencing mean?arrow_forwardThe Japanese canopy plant (Paris japonica) has one of the largest of all eukaryotic genomes, with approximately 150 billion base pairs, about 50 times the size of the human genome. In contrast, the bladderwort Utricularia gibba has one of the smallest plant genomes, with only 82 million base pairs. What predictions can you make about the genomes of these two species?arrow_forwardGiven our knowledge of genome sizes in different organisms, would you predict that Homo sapiens or the two-toed salamander (Amphiuma means) has the larger genome?arrow_forward
- what is the concept of minimal genomesarrow_forwardWhy are closure and completeness important in genome sequencing?arrow_forwardExplain how the different “-omics” involved with the three major parts of the central dogma can be used to study this new species. What are molecular techniques/tools (sequencers) that can be used to study each of these? How would you sequence the genome efficiently (i.e., lowest amount of time and money)?arrow_forward
- The following two sequences represent the same gene from two different species: Assume that all changes in the third position are synonymous and all in the first and second positions are nonsynonymous. a) How many synonymous sites (positions) are there in the gene? b) How many nonsynonymous sites (positions) are there in the gene? c) How many synonymous substitutions are there between species? d) How many nonsynonymous substitutions are there between species? e) What is the dN/dS ratio? f) What does the dN/dS ratio tell you about the evolution of this sequence? Finally, It has been hypothesized that population size affects genome size. What is the proposed relationship? How can it be explained?arrow_forwardWhat is a single-nucleotide polymorphism (SNP)? How are SNPs used in genomic studies?arrow_forwardhow can genomes with a relatively small number of genes produce the vast complexity of phenotypes that results in living organisms, including humans?arrow_forward
- a) Write a short description of why someone would choose to write about wolves vs. dogs. Make an argument for why this topic is interesting. b) Write a short description of why someone would choose this paper below of comparative analysis of the blood transcriptomes between wolves. How does this paper relate to wolves vs. dogs? c) How can you tell that this is a primary research paper and not a review article?arrow_forwardDescribe the difference between Sanger based sequencing and Next Generation Sequencing (NGS). Why is NGS advantageous over Sanger based sequencing?arrow_forwarda)What is Figure 1 in the Zheng et al paper showing? Describe it in your own words. b) What are some sections of the Zheng paper that are re-arranged or different than you might expect in a primary research article. Is this still primary research? c) How did the authors use CRISPR to alter the butterfly wing expression? What was the result of this use of CRISPR?arrow_forward
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