Fill out the dynamic programming table for the local alignment between v and w

Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
icon
Related questions
Question

Fill out the dynamic programming table for the local alignment between v and w

2. Assume the scoring matrix and sequences v and w from Question 1.
a. Fill out the dynamic programming table for the local alignment between v and w. Use the following re-
cursive scoring formula.
|Si-1.j-1+ 8(v;, W;)
= max
+ 8 (Vi, –)
Sij
Si-1,j
Sij-1+ 8(-,w;)
G C А Т С
с А
1 2 3 4 5 6 7
v=
1
А
G
C
4
T
5
C
6.
C
7
G
8
b. What is the score and local alignment between v and w?
2.
3.
Transcribed Image Text:2. Assume the scoring matrix and sequences v and w from Question 1. a. Fill out the dynamic programming table for the local alignment between v and w. Use the following re- cursive scoring formula. |Si-1.j-1+ 8(v;, W;) = max + 8 (Vi, –) Sij Si-1,j Sij-1+ 8(-,w;) G C А Т С с А 1 2 3 4 5 6 7 v= 1 А G C 4 T 5 C 6. C 7 G 8 b. What is the score and local alignment between v and w? 2. 3.
Expert Solution
steps

Step by step

Solved in 3 steps with 4 images

Blurred answer
Knowledge Booster
Structured English
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, computer-science and related others by exploring similar questions and additional content below.
Similar questions
Recommended textbooks for you
Database System Concepts
Database System Concepts
Computer Science
ISBN:
9780078022159
Author:
Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:
McGraw-Hill Education
Starting Out with Python (4th Edition)
Starting Out with Python (4th Edition)
Computer Science
ISBN:
9780134444321
Author:
Tony Gaddis
Publisher:
PEARSON
Digital Fundamentals (11th Edition)
Digital Fundamentals (11th Edition)
Computer Science
ISBN:
9780132737968
Author:
Thomas L. Floyd
Publisher:
PEARSON
C How to Program (8th Edition)
C How to Program (8th Edition)
Computer Science
ISBN:
9780133976892
Author:
Paul J. Deitel, Harvey Deitel
Publisher:
PEARSON
Database Systems: Design, Implementation, & Manag…
Database Systems: Design, Implementation, & Manag…
Computer Science
ISBN:
9781337627900
Author:
Carlos Coronel, Steven Morris
Publisher:
Cengage Learning
Programmable Logic Controllers
Programmable Logic Controllers
Computer Science
ISBN:
9780073373843
Author:
Frank D. Petruzella
Publisher:
McGraw-Hill Education