Explain the theory of IR spectroscopy and its applications in biology.

Basic Clinical Laboratory Techniques 6E
6th Edition
ISBN:9781133893943
Author:ESTRIDGE
Publisher:ESTRIDGE
Chapter1: The Clinical Laboratory
Section1.9: Quality Assessment
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Explain the theory of IR spectroscopy and its applications in biology.

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Step 1

firstly lets look at what infrared radiation is and what are the consequences of a molecule is irradiated with IR rays

  • IR rays fall below the UV-visible region  in the electromagnetic spectrum with a wavelength of the range 700 nm to 25 mm
  • it extends from the red region of VIBGYOR [visible region] to the microwave region
  • in terms of amplitude, its waves are longer than the visible rays
  • chemical bonds connecting atoms behave like 'springs', ie, that are capable of being stretched and compressed when energy is applied. this constitutes the 'vibrational energy of the molecule'
  • these bonds are also flexible ie they can bend or be deformed
  • so, if a molecule has n atoms it will possess a total of 3n-6 fundamental vibrations of which, 2n-5 are bending vibrations and n-1 are stretching vibration
  • when an IR active molecule absorbs light rays, it will absorb a very specific wavelength that will be missing in the transmitted light, this creates an absorption band in the spectrum. such a spectrum is called IR spectrum. these lines/bands are quite distinct.
  • IR spectroscopy is also called functional group spectroscopy or fingerprint spectroscopy because each molecule [and its functional group] absorb a very distinct wavelength of light that will appear as a band on the spectrum. based on the location, wave number of the signal, one can ascertain the functional group in question. 
  1.  

Step 2

how do we ascertain a functional group?

its simple. the spectrum/spectralgraph has  distinct regions: 

  1. functional group region whose range is {\displaystyle \geq 1500{\text{ cm}}^{-1}}

  2. fingerprint region and the range is {\displaystyle <1500{\text{ cm}}^{-1}}
    In this region there are many troughs which form an intricate pattern which can be used like a fingerprint to determine the compound

  3. the table below is used to determine the functional group in the test molecules

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