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2: Align DNA sequences using dot matrix Horizontal sequence: AGGCTCCC; vertical sequence: GCGCTCCG. Complete the dot matrix. Trace the features. Write the brief description of each feature below the matrix. For the dots, copy/paste this dot: • For noise reduction, use window size 2 x 2, mismatch limit 0, dot position 1, 1. Dot matrix after noise reduction:

2: Align DNA sequences using dot matrix Horizontal sequence: AGGCTCCC; vertical sequence: GCGCTCCG. Complete the dot matrix. Trace the features. Write the brief description of each feature below the matrix. For the dots, copy/paste this dot: • For noise reduction, use window size 2 x 2, mismatch limit 0, dot position 1, 1. Dot matrix after noise reduction:

Human Anatomy & Physiology (11th Edition)
Human Anatomy & Physiology (11th Edition)
11th Edition
ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
Publisher:Elaine N. Marieb, Katja N. Hoehn
Chapter1: The Human Body: An Orientation
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Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
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## Align DNA Sequences Using Dot Matrix ### Task Overview Align the given DNA sequences using the dot matrix method. Follow the instructions for noise reduction and describe the features observed in the matrix. ### Sequences - **Horizontal sequence:** AGGCTCCC - **Vertical sequence:** GCGCTCCG ### Instructions 1. **Complete the Dot Matrix:** - Use the given sequences to fill out the matrix. 2. **For Noise Reduction:** - **Window size:** 2 x 2 - **Mismatch limit:** 0 - **Dot position:** 1, 1 3. **Dot Matrix After Noise Reduction:** - A grid is provided where you will plot the dots according to the given parameters. ### Further Noise Reduction 1. **Use the Same Sequences:** - Adjust settings as follows: 2. **For Noise Reduction:** - **Window size:** 3 x 3 - **Mismatch limit:** 1 - **Dot position:** 3, 3 3. **Dot Matrix After Noise Reduction:** - Another grid is provided for plotting the adjusted dot positions with the new noise reduction settings. ### Analysis After plotting the respective matrices, trace prominent features and describe them below each matrix to illustrate how the sequences align. Note any significant patterns or alignments that become more evident with each noise reduction setting.
Transcribed Image Text:## Align DNA Sequences Using Dot Matrix ### Task Overview Align the given DNA sequences using the dot matrix method. Follow the instructions for noise reduction and describe the features observed in the matrix. ### Sequences - **Horizontal sequence:** AGGCTCCC - **Vertical sequence:** GCGCTCCG ### Instructions 1. **Complete the Dot Matrix:** - Use the given sequences to fill out the matrix. 2. **For Noise Reduction:** - **Window size:** 2 x 2 - **Mismatch limit:** 0 - **Dot position:** 1, 1 3. **Dot Matrix After Noise Reduction:** - A grid is provided where you will plot the dots according to the given parameters. ### Further Noise Reduction 1. **Use the Same Sequences:** - Adjust settings as follows: 2. **For Noise Reduction:** - **Window size:** 3 x 3 - **Mismatch limit:** 1 - **Dot position:** 3, 3 3. **Dot Matrix After Noise Reduction:** - Another grid is provided for plotting the adjusted dot positions with the new noise reduction settings. ### Analysis After plotting the respective matrices, trace prominent features and describe them below each matrix to illustrate how the sequences align. Note any significant patterns or alignments that become more evident with each noise reduction setting.
**Exercise 4: Noise Reduction in Sequence Analysis** **Details:** - Continue using the same sequences. - For noise reduction, apply a window size of 3 x 3. - Set the mismatch limit to 0. - Focus on the dot position at coordinates 2, 2. **Visualization:** The **dot matrix after noise reduction** is presented in the form of a grid diagram. - The initial matrix is a small 3x5 grid, which is part of the adjustment process for noise reduction. - The larger matrix displays a plus sign at position 2,2, symbolizing the point of interest after applying noise reduction techniques. These diagrams visually aid in understanding how altering parameters such as window size and mismatch limits can refine the identification of dot positions in a sequence analysis context.
Transcribed Image Text:**Exercise 4: Noise Reduction in Sequence Analysis** **Details:** - Continue using the same sequences. - For noise reduction, apply a window size of 3 x 3. - Set the mismatch limit to 0. - Focus on the dot position at coordinates 2, 2. **Visualization:** The **dot matrix after noise reduction** is presented in the form of a grid diagram. - The initial matrix is a small 3x5 grid, which is part of the adjustment process for noise reduction. - The larger matrix displays a plus sign at position 2,2, symbolizing the point of interest after applying noise reduction techniques. These diagrams visually aid in understanding how altering parameters such as window size and mismatch limits can refine the identification of dot positions in a sequence analysis context.
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