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You are trying to annotate a new phage genome; which program or programs should you use to determine each of the following?

You are trying to annotate a new phage genome; which program or programs should you use to determine each of the following?

Biochemistry
Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
Section: Chapter Questions
Problem 1P
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Below are images of the outputs of three bioinformatics programs (Phamerator, BLASTP and HHPred) that are useful for annotating phage genomes and that you used to complete your genomics activities. Phamerator BLASTP HHPred Boomer 20 Putative conserved domains have been detected, click on the image below for detailed results C w Bay W wwwww.hmm... hmm hmmmm..... Dision of the top 108 Blast Hits on 100 subject sequences Meuse ever see the leto show algmat Coler key feraligament res 50-90 Cerasum -200 0.0 (97.6596) Query 300 200 300 400 Ja 600 0 D 20 Mozy 0.0 (85.6896) 6e-78 (83.9510)(90.23% n 12004) F www.mim www.m.m You are trying to annotate a new phage genome; which program or programs should you use to determine each of the following? Note: Answers may be used more than once. gene function [Choose ] genome similarity to other phages [Choose ] synteny [Choose ] plaque morphology [Choose] M
Transcribed Image Text:Below are images of the outputs of three bioinformatics programs (Phamerator, BLASTP and HHPred) that are useful for annotating phage genomes and that you used to complete your genomics activities. Phamerator BLASTP HHPred Boomer 20 Putative conserved domains have been detected, click on the image below for detailed results C w Bay W wwwww.hmm... hmm hmmmm..... Dision of the top 108 Blast Hits on 100 subject sequences Meuse ever see the leto show algmat Coler key feraligament res 50-90 Cerasum -200 0.0 (97.6596) Query 300 200 300 400 Ja 600 0 D 20 Mozy 0.0 (85.6896) 6e-78 (83.9510)(90.23% n 12004) F www.mim www.m.m You are trying to annotate a new phage genome; which program or programs should you use to determine each of the following? Note: Answers may be used more than once. gene function [Choose ] genome similarity to other phages [Choose ] synteny [Choose ] plaque morphology [Choose] M
✓ [Choose ] None of these programs BLASTp All 3 programs HHPred Phamerator [Choose ] <
Transcribed Image Text:✓ [Choose ] None of these programs BLASTp All 3 programs HHPred Phamerator [Choose ] <
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