Write a function that takes a match, mismatch and gap score, as well as two aligned sequences as input, and returns their alignment score. Apply your function to and print the score for the two sequences (seqa, seqb) as well as for the two sequences in AQY2.fasta. match_score = 2 mismatch_score = -3 gap_score = -5 seqa-D"CGTATGСТAGC" seqb-"СTTАА-СТАGС" # Answer def score_a _alignment(s1, s2, match, mismatch, gap): score = O return (score) print( score_alignment(seqa, seqb, match_score, mismatch_score, gap_score)) # Read in fasta file into seql and seq2 filename = 'AQY2.fasta'

Computer Networking: A Top-Down Approach (7th Edition)
7th Edition
ISBN:9780133594140
Author:James Kurose, Keith Ross
Publisher:James Kurose, Keith Ross
Chapter1: Computer Networks And The Internet
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Problem R1RQ: What is the difference between a host and an end system? List several different types of end...
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Question
Write a function that takes a match, mismatch and gap score, as well as two aligned sequences as input, and returns their alignment score.
Apply your function to and print the score for the two sequences (seqa, seqb) as well as for the two sequences in AQY2.fasta.
: match_score = 2
mismatch_score
-3
gap_score
-5
seqa="CGTATGCTAGC"
seqb-"CTTАА-СТАGC"
%3D
# Answer
def score_alignment(s1, s2, match, mismatch, gap):
Score
= 0
return (score)
print( score_alignment(seqa, seqb, match_score,
mismatch_score, gap_score))
# Read in fasta file into seq1 and seq2
filename = 'AQY2.fasta'
Transcribed Image Text:Write a function that takes a match, mismatch and gap score, as well as two aligned sequences as input, and returns their alignment score. Apply your function to and print the score for the two sequences (seqa, seqb) as well as for the two sequences in AQY2.fasta. : match_score = 2 mismatch_score -3 gap_score -5 seqa="CGTATGCTAGC" seqb-"CTTАА-СТАGC" %3D # Answer def score_alignment(s1, s2, match, mismatch, gap): Score = 0 return (score) print( score_alignment(seqa, seqb, match_score, mismatch_score, gap_score)) # Read in fasta file into seq1 and seq2 filename = 'AQY2.fasta'
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