The file SARS-CoV-2.fasta contains five genomes of SARS-CoV-2: the ancestor (Wuhan, the first sequenced genome), and representatives of four common variants (Alpha, Delta, Gamma, Omicron). Write code to read the sequences. Find all shared gaps between the SARS-CoV-2 genomes, ie where two or more variant genomes have an insertion or deletion in comparison to Wuhan. Print the position in the alignment and the sequence present in each genome for these positions. Do not print gaps at the beginning or end of the genomes since these are just regions that weren't sequenced and aren't true insertion/deletion events. # Answer

Database System Concepts
7th Edition
ISBN:9780078022159
Author:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Chapter1: Introduction
Section: Chapter Questions
Problem 1PE
icon
Related questions
Question

Please, provide code in python

:
The file SARS-CoV-2.fasta contains five genomes of SARS-CoV-2: the ancestor (Wuhan, the first sequenced genome), and representatives of four common
variants (Alpha, Delta, Gamma, Omicron). Write code to read the sequences.
Find all shared gaps between the SARS-CoV-2 genomes, ie where two or more variant genomes have an insertion or deletion in comparison to Wuhan. Print
the position in the alignment and the sequence present in each genome for these positions. Do not print gaps at the beginning or end of the genomes since
these are just regions that weren't sequenced and aren't true insertion/deletion events.
#Answer
Transcribed Image Text:: The file SARS-CoV-2.fasta contains five genomes of SARS-CoV-2: the ancestor (Wuhan, the first sequenced genome), and representatives of four common variants (Alpha, Delta, Gamma, Omicron). Write code to read the sequences. Find all shared gaps between the SARS-CoV-2 genomes, ie where two or more variant genomes have an insertion or deletion in comparison to Wuhan. Print the position in the alignment and the sequence present in each genome for these positions. Do not print gaps at the beginning or end of the genomes since these are just regions that weren't sequenced and aren't true insertion/deletion events. #Answer
Expert Solution
trending now

Trending now

This is a popular solution!

steps

Step by step

Solved in 3 steps

Blurred answer
Knowledge Booster
Hash Table
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, computer-science and related others by exploring similar questions and additional content below.
Similar questions
Recommended textbooks for you
Database System Concepts
Database System Concepts
Computer Science
ISBN:
9780078022159
Author:
Abraham Silberschatz Professor, Henry F. Korth, S. Sudarshan
Publisher:
McGraw-Hill Education
Starting Out with Python (4th Edition)
Starting Out with Python (4th Edition)
Computer Science
ISBN:
9780134444321
Author:
Tony Gaddis
Publisher:
PEARSON
Digital Fundamentals (11th Edition)
Digital Fundamentals (11th Edition)
Computer Science
ISBN:
9780132737968
Author:
Thomas L. Floyd
Publisher:
PEARSON
C How to Program (8th Edition)
C How to Program (8th Edition)
Computer Science
ISBN:
9780133976892
Author:
Paul J. Deitel, Harvey Deitel
Publisher:
PEARSON
Database Systems: Design, Implementation, & Manag…
Database Systems: Design, Implementation, & Manag…
Computer Science
ISBN:
9781337627900
Author:
Carlos Coronel, Steven Morris
Publisher:
Cengage Learning
Programmable Logic Controllers
Programmable Logic Controllers
Computer Science
ISBN:
9780073373843
Author:
Frank D. Petruzella
Publisher:
McGraw-Hill Education