The φ angle represents rotation about which bonds? (mark these bonds with a φ directly on this structure)

Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
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The φ angle represents rotation about which bonds? (mark these bonds with a φ directly on this structure)

This image illustrates a structural formula of a pentapeptide, which is a type of peptide made up of five amino acids linked by peptide bonds. The sequence of the amino acids is from left to right:

1. **Glutamic Acid**: 
   - Side chain: CH₂-CH₂-COOH.

2. **Valine**:
   - Side chain: CH-(CH₃)₂.

3. **Serine**:
   - Side chain: CH₂-OH.

4. **Lysine**:
   - Side chain: (CH₂)₄-NH₂.
   
5. **Cysteine**:
   - Side chain: CH₂-SH.

### Peptide Bonds:
The red circled areas in the diagram represent the peptide bonds, which are formed by the condensation reaction between the carboxyl group of one amino acid and the amine group of the next amino acid.

### General Structure Description:
- **Backbone**: Comprised of repeating units of nitrogen (N), carbon (C), and oxygen (O).
- **R-groups**: Each amino acid has a specific side chain or R-group, which gives the amino acid its unique properties. These are branching from the main chain.
  
This structure is a simplified representation of the arrangement and linkage of amino acids that form a functional element in various biological processes. Understanding these linkages can provide insight into protein biosynthesis and function.
Transcribed Image Text:This image illustrates a structural formula of a pentapeptide, which is a type of peptide made up of five amino acids linked by peptide bonds. The sequence of the amino acids is from left to right: 1. **Glutamic Acid**: - Side chain: CH₂-CH₂-COOH. 2. **Valine**: - Side chain: CH-(CH₃)₂. 3. **Serine**: - Side chain: CH₂-OH. 4. **Lysine**: - Side chain: (CH₂)₄-NH₂. 5. **Cysteine**: - Side chain: CH₂-SH. ### Peptide Bonds: The red circled areas in the diagram represent the peptide bonds, which are formed by the condensation reaction between the carboxyl group of one amino acid and the amine group of the next amino acid. ### General Structure Description: - **Backbone**: Comprised of repeating units of nitrogen (N), carbon (C), and oxygen (O). - **R-groups**: Each amino acid has a specific side chain or R-group, which gives the amino acid its unique properties. These are branching from the main chain. This structure is a simplified representation of the arrangement and linkage of amino acids that form a functional element in various biological processes. Understanding these linkages can provide insight into protein biosynthesis and function.
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