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How many markers of the genome are significantly associated with the trait?

How many markers of the genome are significantly associated with the trait?

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Imagine a 9-armed, hairy monster, who lives in Monster Land. It has a genome that is very similar to a mammal genome (diploid, same type of sex determination, etc). There are three different colours of this monster: Purple, Yellow, and Purple and Yellow mixed. Here is a table of 20 individuals and 10 SNPs, where the name of the SNP is the chromosome and the position (chromosome.position). Using this table, do a GWAS with only these 10 SNPs. How many markers of the genome are significantly associated with the trait? Phenotype chr1.1 chr2.8 chr3.12 chr4.12 chr4.55 chr7.88 chr9.55 chr10.1 chrX.1 chrX.5 Purple AA AT F GG CC CC 8 TT TT TT CT Purple AA AT TT GC CC CC AT TT TT CT Yellow AA AT TT GC CC CC AT AT GG CT Purple and AA TT TT GC TT CC AT AT GT CT Yellow Purple AA AT AA GG Purple AA AT 순 E TT GC AT TT TT CT AA GG TT GC AT TT TT CT Purple AA AT AA CC TT GG AT TT TT TT Purple AA AT AA GG CC GG AT TT TT TT Purple and AA TT AT CC CC GG AT AT GT TT Yellow Purple AA AT AT CC CC GC AT TT TT TT Purple AA AT AT CC TT GC AT TT TT CC Purple AA AT TT ㅠ CC TT GG AT TT TT CC Yellow AA AT AT GC TT CC AT AT GG CC Yellow AA AT AT 60 GC CC CC AT AT GG TT Yellow AA AT AT GG CC CC AT AT GG TT Purple and AA AA AT Yellow Yellow AA 로 AA TT Purple AA AA AT བྷ་ ིི་ 8 CC CC AT AT GT TT GG AT AT GG CC GG AT TT TT = TT TT E CC 80 Purple and AT AA TT GC CC GG AT AT GT CC Yellow Purple AA AA TT GG CC GG AA TT GT CC 000 0 2 5 10
Transcribed Image Text:Imagine a 9-armed, hairy monster, who lives in Monster Land. It has a genome that is very similar to a mammal genome (diploid, same type of sex determination, etc). There are three different colours of this monster: Purple, Yellow, and Purple and Yellow mixed. Here is a table of 20 individuals and 10 SNPs, where the name of the SNP is the chromosome and the position (chromosome.position). Using this table, do a GWAS with only these 10 SNPs. How many markers of the genome are significantly associated with the trait? Phenotype chr1.1 chr2.8 chr3.12 chr4.12 chr4.55 chr7.88 chr9.55 chr10.1 chrX.1 chrX.5 Purple AA AT F GG CC CC 8 TT TT TT CT Purple AA AT TT GC CC CC AT TT TT CT Yellow AA AT TT GC CC CC AT AT GG CT Purple and AA TT TT GC TT CC AT AT GT CT Yellow Purple AA AT AA GG Purple AA AT 순 E TT GC AT TT TT CT AA GG TT GC AT TT TT CT Purple AA AT AA CC TT GG AT TT TT TT Purple AA AT AA GG CC GG AT TT TT TT Purple and AA TT AT CC CC GG AT AT GT TT Yellow Purple AA AT AT CC CC GC AT TT TT TT Purple AA AT AT CC TT GC AT TT TT CC Purple AA AT TT ㅠ CC TT GG AT TT TT CC Yellow AA AT AT GC TT CC AT AT GG CC Yellow AA AT AT 60 GC CC CC AT AT GG TT Yellow AA AT AT GG CC CC AT AT GG TT Purple and AA AA AT Yellow Yellow AA 로 AA TT Purple AA AA AT བྷ་ ིི་ 8 CC CC AT AT GT TT GG AT AT GG CC GG AT TT TT = TT TT E CC 80 Purple and AT AA TT GC CC GG AT AT GT CC Yellow Purple AA AA TT GG CC GG AA TT GT CC 000 0 2 5 10
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