Consider the following three sequences: seql = "HLMLGAHCCGLLCALAHAMM" seq2 = "KLLAKCHMCMGHALGALKLH" seq3 = "KLKAAHACLHCLGALMLLAL" Compose a python program to perform pairwise sequence alignment on (i) seq1 and seq2. (ii) seq1 and seq3, and (iii) seq2 and seq3 using the objective functions (a) & (b) below respectively. For each objective function, report the score of the best pairwise sequence alignment between the pair of sequences in (i), (ii) & (iii). Based on your findings, state which pairs of the sequences in (i), (ii) & (iii) have the best pairwise sequence alignment. Write your answers as comments in your python program. Name your python program as "LA3_1.py". a) Matched character Unmatched character Opening gap penalty Extended gap penalty +4 -1 -2 -1

Computer Networking: A Top-Down Approach (7th Edition)
7th Edition
ISBN:9780133594140
Author:James Kurose, Keith Ross
Publisher:James Kurose, Keith Ross
Chapter1: Computer Networks And The Internet
Section: Chapter Questions
Problem R1RQ: What is the difference between a host and an end system? List several different types of end...
icon
Related questions
Question

Hope for solve this question which i find in internet, hope for explain in the code using #, Thanks a lot

Consider the following three sequences:
seq1 = "HLMLGAHCCGLLCALAHAMM"
seq2
= "KLLAKCHMCMGHALGALKLH"
seq3 = "KLKAAHACLHCLGALMLLAL"
Compose a python program to perform pairwise sequence alignment on (i) seq1 and seq2. (ii)
seql and seq3, and (iii) seq2 and seq3 using the objective functions (a) & (b) below
respectively.
For each objective function, report the score of the best pairwise sequence alignment between
the pair of sequences in (i), (ii) & (iii). Based on your findings, state which pairs of the
sequences in (i), (ii) & (iii) have the best pairwise sequence alignment. Write your answers as
comments in your python program.
Name your python program as "LA3_1.py".
b)
Matched character
Unmatched character
Opening gap penalty
Extended gap penalty
Substitution matrix
Opening gap penalty
Extended gap penalty
+4
-1
-2
-1
Blosum62
-1
-0.5
Transcribed Image Text:Consider the following three sequences: seq1 = "HLMLGAHCCGLLCALAHAMM" seq2 = "KLLAKCHMCMGHALGALKLH" seq3 = "KLKAAHACLHCLGALMLLAL" Compose a python program to perform pairwise sequence alignment on (i) seq1 and seq2. (ii) seql and seq3, and (iii) seq2 and seq3 using the objective functions (a) & (b) below respectively. For each objective function, report the score of the best pairwise sequence alignment between the pair of sequences in (i), (ii) & (iii). Based on your findings, state which pairs of the sequences in (i), (ii) & (iii) have the best pairwise sequence alignment. Write your answers as comments in your python program. Name your python program as "LA3_1.py". b) Matched character Unmatched character Opening gap penalty Extended gap penalty Substitution matrix Opening gap penalty Extended gap penalty +4 -1 -2 -1 Blosum62 -1 -0.5
Expert Solution
trending now

Trending now

This is a popular solution!

steps

Step by step

Solved in 4 steps with 4 images

Blurred answer
Recommended textbooks for you
Computer Networking: A Top-Down Approach (7th Edi…
Computer Networking: A Top-Down Approach (7th Edi…
Computer Engineering
ISBN:
9780133594140
Author:
James Kurose, Keith Ross
Publisher:
PEARSON
Computer Organization and Design MIPS Edition, Fi…
Computer Organization and Design MIPS Edition, Fi…
Computer Engineering
ISBN:
9780124077263
Author:
David A. Patterson, John L. Hennessy
Publisher:
Elsevier Science
Network+ Guide to Networks (MindTap Course List)
Network+ Guide to Networks (MindTap Course List)
Computer Engineering
ISBN:
9781337569330
Author:
Jill West, Tamara Dean, Jean Andrews
Publisher:
Cengage Learning
Concepts of Database Management
Concepts of Database Management
Computer Engineering
ISBN:
9781337093422
Author:
Joy L. Starks, Philip J. Pratt, Mary Z. Last
Publisher:
Cengage Learning
Prelude to Programming
Prelude to Programming
Computer Engineering
ISBN:
9780133750423
Author:
VENIT, Stewart
Publisher:
Pearson Education
Sc Business Data Communications and Networking, T…
Sc Business Data Communications and Networking, T…
Computer Engineering
ISBN:
9781119368830
Author:
FITZGERALD
Publisher:
WILEY