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- You perform a northern blot to determine whether CFTR (Cystic fibrosis transmembrane conductance regulator) mRNA is expressed in small intestine tissue. You do not detect any MRNA in this sample. Which of the following is a valid conclusion from your experiment? O This gene is not expressed in this organism O This gene is likely not transcribed in the small intestine O Small intestine cells do not contain the CFTR gene O There is no MRNA, because it has all been converted to proteinOpsin proteins detect light in photoreceptor cells of theeye and are required for color vision. The nocturnal owlmonkey, the nocturnal bush baby, and the subterraneanblind mole rat have different mutations in an opsin genethat render it nonfunctional. Explain why all three species can tolerate mutations in this gene that operates inmost other mammals.a. Explain how you could use worms transformedwith myo-2::GFP to find mutations that disrupt thestructure of the pharynx. How would the presenceof the transgene facilitate the mutant screen?b. Nematodes homozygous for loss-of-function mutations in a gene called pha-4 have no detectablepharyngeal structures. How could you use myo2::GFP to determine if pha-4 is a master regulatory gene that directs development of the pharynxin a manner similar to the way Pax-6/eyeless controls eye development?
- The TBX20 transcription factor is important for the developmentof heart tissue. Deletion of the Tbx20 gene in mice results in poorheart development and the death of mice well before birth. Tobetter understand how TBX20 regulates heart development ata genetic level, Sakabe et al. (2012. Hum. Mol. Genet. 21:2194–2204) performed a transcriptome analysis in which they comparedthe levels of all mRNAs between heart cells from wild-typemice and mice with Tbx20 deleted. This study concluded that TBX20 acts as an activator ofsome genes but a repressor of other genes in cardiac tissue.How might a single transcription factor have oppositeeffects on the transcription of different genes?Mutations in genes that change their pattern of expression (the time and cell type in which the gene productis produced) are thought to be a major factor in the evolution of different organisms. Would you expect thesame protein to work in the same way (for example, toperform the same kind of enzymatic reaction) in twodifferent types of cells (for example, cells in the retinaof the eye and muscle cells)? Is it possible that the sameprotein might function in different biochemical pathways in eye cells and muscle cells even if the protein’sbasic mechanism always remains the same?Erythritol is a natural sugar abundant in fruits and fermentingfoods. Pathogenic bacterial strains that catabolize erythritolcontain four closely spaced genes, all involved in erythritolmetabolism. One of the four genes (eryD) encodes a productthat represses the expression of the other three genes. Erythritolcatabolism is stimulated by erythritol. Present a regulatorymodel to account for the regulation of erythritol catabolism insuch bacterial strains. Does this system appear to be underinducibleor repressible control?
- When during the development of most mammals is lactose available for use by E. coli in the gut? How does the availability of lactose to E. coli in humans differ from that seen in other mammals?How can one most effectively silence the myofilament gene unc-22 in C. elegans to produce the twitching phenotype? O A. Screen thousands of strains for a spontaneous unc-22 mutation O B. Soak worms in mutagenic solutions of EMS and screen the progeny OC. Inject antisense strands of unc-22 RNA into worm ovaries, which will be taken up by germ line cells and expressed in progeny O D. Inject a high dose of unc-22 MRNA into worm ovaries, which will be taken up by germ line cells and expressed in progeny O E. Culture worms with E. coli transformed with a plasmid that codes for a dsRNA unc-22 constructIn Ullrich et al. (2022), the authors describe that the different Covid variants have "missense" mutations. What are missense mutations? Conformational changes in enzymes The substitution of amino acid in the protein Mutations that occur directly to the enzyme's active site that results in substrates not being able to bind O The substitution of the non-amino acid atoms or molecules that are permanently attached to proteins called prosthetic groups
- Locate a gene expression data set on Gene Expression Omnibus using "expression by hybridization" involving Rabies virus or related virus Use GEO2R to perform pairwise group analysis Explore and identify the most regulated genes: gene/protein functions of Rabies virusand Define the significance of these genes/proteins in the disease process.. An interesting mutation in lacI results in repressorswith 110-fold increased binding to both operator andnonoperator DNA. These repressors display a “reverse”induction curve, allowing β-galactosidase synthesis inthe absence of an inducer (IPTG) but partly repressingβ-galactosidase expression in the presence of IPTG. Howcan you explain this? (Note that, when IPTG binds a repressor, it does not completely destroy operator affinity,but rather it reduces affinity 110-fold. Additionally, ascells divide and new operators are generated by thesynthesis of daughter strands, the repressor must findthe new operators by searching along the DNA, rapidlybinding to nonoperator sequences and dissociating fromthem.)Researchers have successfully used gene therapy toameliorate some human genetic diseases by adding anormal gene copy to cells whose genomes originallyhad only nonfunctional mutant copies of that gene.For example, a form of blindness due to the lack of asingle protein called RPE65 has been reversed byintroduction of a normal RPE65 gene to cells of theretina of adults.a. The success of this gene therapy approach providesus with clues about the role of the RPE65 proteinin the retina. Do you think that RPE65 is neededfor the proper development of the human eye?b. Can you see a potential difficulty in applying this genetherapy approach for diseases like microcephaly?