A peptide has the sequenceGlu-His–Trp–Ser-Gly–Leu-Arg-Pro–GlyThe pK, values for the peptide's side chains, terminal amino groups, and carboxyl groups are provided in the table.Amino acid Amino pKa Carboxyl pKa Side-chain pKaglutamate9.602.344.25histidine9.171.826.00tryptophan9.392.38serine9.152.21glycine9.602.34leucine9.602.36arginine9.042.1712.48proline10.961.99Calculate the net charge of the molecule at pH 3.net charge at pH 3:

Amino acids have alpha amino and carboxyl groups that can be titrated. Some amino acids have side…

Answered: A peptide has the sequence…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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Please draw a visual representation
At which pH would the peptide with the amino acid sequence 'KEYHR' be found in an IPG (Immobilized pH gradient) strip after successful isoelectric focusing. Show calculation. lonizable groups Alpha amine group of K Side chain group of K Side chain group of E Side chain group of Y Side chain group of H Side chain group of R Alpha carboxylic acid group of R pka 8.95 10.53 4.25 10.07 6 12.48 2.17
For each amino acid, show the structure, 1-letter abbreviation, 3-letter abbreviation, class (non-polar, polar, positive or negative), special props, side chain pKa)
Identify the 20 amino acids and their corresponding three-letter and one-letter abbreviations
What is the charge on the following peptide at standard biochemical pH? S-Y-D-F-K-I-V-F-L-L +2 -1 0 0 0-2 O +1
A NONAPEPTIDE that attacks and kills cancer cells has just been recently isolated from a rare fungus. Amino acid analysis of the peptide reveals the following information below: (NOTE: when the sequence is not known, a comma separates the amino acids) Hydrezine Nonapeptide Acid Hydrolysis (4 N HCI) at 110 C (2) Arg. Gin, (2) Tyr, Gly, Ser, Thr, and Met 2,4-dinitrolluorobenzene DNP-Thr Gin and Peptide 1 (Arg. Thr, Ser) modified free amino acids Cleavoge with Trypsin, then thrometography Peptide 2 (Gly, Tyr, Arg) Met Tripeptide (yenegen bromide Dipeptide Cleovoge with Chymetrypsin, then chromatography Peptide 3 (Arg, Ser, Tyr, Thr) Amino acid Peptide 4 (Gly, Arg, Tyr) When answering the questions below, please use the one-letter code for the amino acid, with NO spaces and symbols between each letter. 1. What is the N-terminal AA residue? 2. What is the C-terminal AA residue? 3. What is the sequence of Peptide 1? 4. What is the sequence of Peptide 4? 5. What is the overall amino acid…
At what pH can you separate the following peptides: ala-ala-ala, glu-glu-glu, his-his-his? OA 2.0 B. 4.0 C. 5.0 O D. 7.0 E. 9.5
1) Indicate the total charge of the peptide at pH 7.0, 9.0, and 11.0 2) Determine the isoelectric point (pI) for this peptide. Show the relevant pKa’s and your calculation. 3) What is the fraction of the peptide that has the N-terminal amino group deprotonated at pH 9.
Based on the pK, table for amino acids (Table 1.1), draw the structures with net charge, and the equilibria representing the complete deprotonation of aspartate. Table 1.1 Name pK pk2 pKR Glycine Alanine 2.4 9.8 2.3 9.7 Valine 2.3 2.4 9.6 Leucine 9.6 Isoleucine 2.4 9.7 Methionine 2.3 9.2 Phenylalanine Proline Serine 1.8 9.1 2.0 10.6 2.1 9.2 Threonine 2.6 10.4 Cysteine Asparagine Glutamine 1.8 10.8 8.3 2.0 8.8 2.2 9.1 Tyrosine Tryptophan Aspartate Glutamate 2.2 9.1 10.9 2.4 9.4 2.0 2.2 10.0 3.9 9.7 4.3 Histidine 1.8 9.2 6.0 10.8 Lysine Arginine 2.2 9.2 1.8 9.0 12.5
identify the interaction that may be produced between the side chain of amino acid residues found at the N-terminus and the C-terminus of the peptide. List all possible peptides that can be formed from the given peptide (use three character/letter abbreviations for each amino acid, i.e., Ala-Gly-Val). NOTE: Any excess will be deducted to the correct answers. Be careful in evaluating your answers.
Write the structure of the following peptides Expanded structure. Use any other ink for peptide bond. [For your reference download all the amino acids with the three and single letter symbol] a) leucyl glycyl leucyl alanine b) histidyl tyrosyl alanyl glycine c) glycyl phenylalanyl tyrosyl seryl histidine

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