1. Calculate the pH of a 1 L solution containing 6 mL of 1.5 M acetic acid and 5 ml of 0.4 M sodium acetate. The pKa of acetic acid is 4.76.

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1. Calculate the pH of a 1 L solution containing 6 mL of 1.5 M acetic acid and 5 mL of
0.4 M sodium acetate. The pKa of acetic acid is 4.76.
2. What is the ratio of conjugate base to acid of buffer (pKa=4.8) with pH=4.8?
Show your work.
3. Phosphate buffers are common in biochemistry lab. They can be made from
phosphoric acid (H;PO4):
pКа-2.15
pKa=7.20
pKa=12.35
H,PO,
H,PO,
HPO, 2 PO,*
Which acid/conjugate base would you use to prepare a buffer at pH=8.11?
Which acid/conjugate base would you use to prepare a buffer at pH=11.11?
Which acid/conjugate base would you use to prepare a buffer at pH=3.11?
4. Sulfhydryl groups are capable of ionizing (losing a proton). The pka of the side
chain of Cys is 8.18. Explain why Cys is drawn as -SH and not -S at physiological
pH.
5. Which of the amino acids below would most likely be found on the surface of a
protein? Which would be found on the inside of a globular protein? Explain your
answer.
Asp, Phe, Ser, Leu, Arg
Transcribed Image Text:1. Calculate the pH of a 1 L solution containing 6 mL of 1.5 M acetic acid and 5 mL of 0.4 M sodium acetate. The pKa of acetic acid is 4.76. 2. What is the ratio of conjugate base to acid of buffer (pKa=4.8) with pH=4.8? Show your work. 3. Phosphate buffers are common in biochemistry lab. They can be made from phosphoric acid (H;PO4): pКа-2.15 pKa=7.20 pKa=12.35 H,PO, H,PO, HPO, 2 PO,* Which acid/conjugate base would you use to prepare a buffer at pH=8.11? Which acid/conjugate base would you use to prepare a buffer at pH=11.11? Which acid/conjugate base would you use to prepare a buffer at pH=3.11? 4. Sulfhydryl groups are capable of ionizing (losing a proton). The pka of the side chain of Cys is 8.18. Explain why Cys is drawn as -SH and not -S at physiological pH. 5. Which of the amino acids below would most likely be found on the surface of a protein? Which would be found on the inside of a globular protein? Explain your answer. Asp, Phe, Ser, Leu, Arg
6. If amino acid X has pl=4.6, what is its charge in each of the following buffers?
A. pH=10.2
12. pH=7.4
C. pH=5
D. pH=2.5
7. The figure below is the amino acid sequence of a growing peptide.
NH2
a. What is the 3rd amino acid?
b. What level of protein structure does the figure represent?
8. A Lys residue in a protein was changed to Asn, Asp, and Arg. Which substitution would
have the greatest effect on the tertiary structure? The least effect? Explain your answer.
9. Histones are basic proteins that interact with DNA. What amino acids would be found in
high abundance in histones? What type of interaction forms between histones and DNA?
10. Receptor proteins are located on the surfaces of cells. They bind molecules or ligands
that cannot directly enter the cell. The binding of a ligand to a receptor leads to some
change within the cell. In a receptor protein, a Glu is changed to Ala and binding of the
ligand decreases 100-fold. What does this tell you about the interaction between the ligand
and receptor?
Transcribed Image Text:6. If amino acid X has pl=4.6, what is its charge in each of the following buffers? A. pH=10.2 12. pH=7.4 C. pH=5 D. pH=2.5 7. The figure below is the amino acid sequence of a growing peptide. NH2 a. What is the 3rd amino acid? b. What level of protein structure does the figure represent? 8. A Lys residue in a protein was changed to Asn, Asp, and Arg. Which substitution would have the greatest effect on the tertiary structure? The least effect? Explain your answer. 9. Histones are basic proteins that interact with DNA. What amino acids would be found in high abundance in histones? What type of interaction forms between histones and DNA? 10. Receptor proteins are located on the surfaces of cells. They bind molecules or ligands that cannot directly enter the cell. The binding of a ligand to a receptor leads to some change within the cell. In a receptor protein, a Glu is changed to Ala and binding of the ligand decreases 100-fold. What does this tell you about the interaction between the ligand and receptor?
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