F23 Exp 2 Phosphatase Lab Report

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University of Texas, Dallas *

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Course

3380

Subject

Biology

Date

Dec 6, 2023

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docx

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3

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BIOL 3380 Experiment 2 - Lab Report Characterization of Phosphatase Activity in a Crude Alfalfa Sprout Extract Name: Circle your lab section: T–AM W-AM R-AM F-AM T–PM W-PM R-PM F-PM Instructor: Graduate TA: Date: Partner:
Experiment 2 - Lab Report Characterization of Phosphatase Enzyme Inserting your answers after each question/space. Please denote your answers by using bold , italic s, or colored font. Do NOT renumber/reorganize the questions. “Showing your work/calculations” can be achieved by typing it out, pasting in a clear image of your handwritten work, or using handwritten annotation on the document (if you have the technology to do so). Insert graphs (handwritten on graph paper or electronically constructed with horizontal/vertical gridlines) as a clear image with appropriate titles, labeled/scaled axes, and standard deviation bars when appropriate. 1. (6pts) Construct two separate bar graphs depicting your results for the effect of pH and temperature on phosphatase activity. All figures, graphs, and tables must include appropriate titles, legends, labeled/scaled axes, and standard deviation bars. Do not include a figure caption. * If you experience problems adding custom error bars with Excel/Google sheet graphs, hand- drawn error bars are acceptable. 2. (2pts) Show all the calculations for the pH 5 data point that was plotted on your pH graph. 3. (3pts) Based upon your data, a) What was the temperature optimum of the phosphatase assay? b) What was the pH optimum of the phosphatase assay? c) How would you classify the phosphatase activity found in your extract? 4. (4pts) Write an abstract for this experiment. An abstract is a brief paragraph (three to five sentences) that communicates the purpose, the experiment conducted, and the specific conclusions of the experiment. Abstract should be concise without going into details about the protocol. Each sentence should convey required, non-redundant information. 5. (3pts) A student added sodium carbonate to a reaction tube and the color remained clear. Propose three specific reasons why the student saw no color change. 6. (3pts) Increasing the temperature of a chemical reaction generally favors product formation. Propose a hypothesis for why the 75°C reaction conditions did not produce the most activity. 2-2
7. (3pts) A student performed the same experiment but used onion sprouts. The data showed three peaks for the optimal pH at 2.4, 8.5, and 10.6. Propose a logical hypothesis for the observed data. 8. (2pts) Describe in detail how you would make 575ml of a 15% Na 2 CO 3 given a 500g bottle of anhydrous sodium carbonate (MW = 105.99g/mole). Show your calculations for full credit. 9. (2pts) Given 750ml of a 5M Na 2 CO 3 stock solution, how much do you need to make 575ml of a 15% Na 2 CO 3 working solution? Show your calculations for full credit. 10. (4pts) A vegetative storage protein (VSP2) from the model plant Arabidopsis thaliana (At) was purified as a wild-type (AtVSP2) and a recombinant protein (Nus-AtVSP2). D119E is an aspartic acid to glutamic acid substitution at amino acid position 119. The phosphatase activity was measured under different pH conditions (adapted from Liu et. al. Plant Physiol . 2005;139:1545- 1556). a) What observation can you make about adding the Nus recombinant tag to AtVSP2? Propose a reasonable scientific hypothesis for the observed effect. b) What can you conclude about the effect of the D119E mutation on the phosphatase activity? 2-3
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